Aliases for CPEB2-DT Gene

Data sources for CPEB2-DT Gene:

RNA type for CPEB2-DT Gene

lncRNA

Aliases for CPEB2-DT Gene

External Ids for CPEB2-DT Gene

Previous HGNC Symbols for CPEB2-DT Gene

  • CPEB2-AS1

Summaries for CPEB2-DT Gene

GeneCards Summary for CPEB2-DT Gene

CPEB2-DT (CPEB2 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CPEB2-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CPEB2-DT Gene

Genomics for CPEB2-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CPEB2-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J015000 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 257.4 +0.2 222 7.4 BCLAF1 ZNF207 IKZF1 MYC ZNF600 POLR2A NFIC ZIC2 ZBTB10 YY1 CPEB2 CPEB2-DT C1QTNF7 LINC00504 C1QTNF7-AS1
GH04J015078 Enhancer 0.9 Ensembl ENCODE 7.3 -77.4 -77377 9.4 CEBPA ATF3 YY1 CEBPB EP300 FOXA2 RXRA RAD21 RFX5 ZNF585B CC2D2A LINC00504 CPEB2-DT CPEB2 LINC01085 HSALNG0033042 RN7SKP170 lnc-FBXL5-11 C1QTNF7 C1QTNF7-AS1
GH04J014993 Enhancer 0.7 Ensembl 7.2 +9.8 9822 1.4 JUND ATF2 CEBPB CTBP1 NFE2 ATF1 EHMT2 PKNOX1 INSM2 REST CPEB2-DT RF00994-718 CPEB2 lnc-FBXL5-12
GH04J015034 Enhancer 0.6 Ensembl ENCODE dbSUPER 7.1 -30.1 -30103 1.2 FOS CPEB2-DT HSALNG0033041 CPEB2 HSALNG0033042 C1QTNF7 C1QTNF7-AS1
GH04J015019 Enhancer 0.6 Ensembl dbSUPER 7.2 -16.8 -16777 2.6 EBF1 IKZF1 SPI1 IKZF2 CPEB2-DT HSALNG0033041 CPEB2 HSALNG0033042 C1QTNF7 C1QTNF7-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CPEB2-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CPEB2-DT Gene

Latest Assembly
chr4:14,909,960-15,004,323
(GRCh38/hg38)
Size:
94,364 bases
Orientation:
Minus strand

Previous Assembly
chr4:14,911,585-15,003,669
(GRCh37/hg19 by Entrez Gene)
Size:
92,085 bases
Orientation:
Minus strand

chr4:14,911,585-15,003,669
(GRCh37/hg19 by Ensembl)
Size:
92,085 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr4(PATCHES):57,114-73,939 (-)

Genomic View for CPEB2-DT Gene

Genes around CPEB2-DT on UCSC Golden Path with GeneCards custom track
CPEB2-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CPEB2-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPEB2-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPEB2-DT Gene

Proteins for CPEB2-DT Gene

Post-translational modifications for CPEB2-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CPEB2-DT Gene

Domains & Families for CPEB2-DT Gene

Gene Families for CPEB2-DT Gene

genes like me logo Genes that share domains with CPEB2-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CPEB2-DT Gene

Function for CPEB2-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CPEB2-DT Gene

Localization for CPEB2-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CPEB2-DT Gene

Pathways & Interactions for CPEB2-DT Gene

PathCards logo

SuperPathways for CPEB2-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for CPEB2-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CPEB2-DT Gene

Drugs & Compounds for CPEB2-DT Gene

No Compound Related Data Available

Transcripts for CPEB2-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CPEB2-DT Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000378668_9606 lncRNA 1811 4

Ensembl: ENST00000501916 (view in UCSC) ,

LncBook: HSALNT0069483,

LNCipedia: CPEB2-DT:26,

NONCODE: NONHSAT095612.2,

URS00001E383F_9606 lncRNA 1638 4

Ensembl: ENST00000500394 (view in UCSC) ,

LncBook: HSALNT0069475,

LNCipedia: CPEB2-DT:21,

NONCODE: NONHSAT095610.2,

URS000075EC33_9606 lncRNA 1630 1

RefSeq: NR_038857,

URS00008B6ADE_9606 lncRNA 492 3

LncBook: HSALNT0069484,

LNCipedia: CPEB2-DT:27,

NONCODE: NONHSAT095613.2,

URS0000D57897_9606 lncRNA 2256 2

LncBook: HSALNT0069486,

LNCipedia: CPEB2-DT:25,

CPEB2-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CPEB2-DT Gene

8 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CPEB2-DT Gene

No ASD Table

Relevant External Links for CPEB2-DT Gene

GeneLoc Exon Structure for
CPEB2-DT

Expression for CPEB2-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CPEB2-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CPEB2-DT Gene

Orthologs for CPEB2-DT Gene

Evolution for CPEB2-DT Gene

ENSEMBL:
Gene Tree for CPEB2-DT (if available)
TreeFam:
Gene Tree for CPEB2-DT (if available)
Alliance of Genome Resources:
Additional Orthologs for CPEB2-DT

No data available for Orthologs for CPEB2-DT Gene

Paralogs for CPEB2-DT Gene

No data available for Paralogs for CPEB2-DT Gene

Variants for CPEB2-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CPEB2-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for CPEB2-DT Gene

Variant ID Type Subtype PubMed ID
dgv105e19 CNV gain 19470904
esv1009627 CNV insertion 20482838
esv1205571 CNV insertion 17803354
esv1232943 CNV deletion 17803354
esv1492264 CNV deletion 17803354
esv1516048 CNV insertion 17803354
esv2727210 CNV deletion 23290073
esv2727211 CNV deletion 23290073
esv2727212 CNV deletion 23290073
esv29275 CNV loss 19812545
esv3328411 CNV insertion 20981092
esv3360212 CNV duplication 20981092
esv3364270 CNV duplication 20981092
esv3563458 CNV deletion 23714750
esv991701 CNV insertion 20482838
nsv1073739 CNV deletion 25765185
nsv1074694 CNV deletion 25765185
nsv1128886 CNV duplication 24896259
nsv1136819 CNV deletion 24896259
nsv1153142 CNV deletion 26484159
nsv1161060 CNV deletion 26073780
nsv1161061 CNV deletion 26073780
nsv292436 CNV insertion 16902084
nsv4244 CNV insertion 18451855
nsv461280 CNV loss 19166990
nsv471837 CNV novel sequence insertion 20440878
nsv480896 CNV novel sequence insertion 20440878
nsv508998 CNV insertion 20534489
nsv508999 CNV insertion 20534489
nsv593756 CNV loss 21841781
nsv593757 CNV loss 21841781
nsv593758 CNV gain 21841781
nsv593759 CNV loss 21841781
nsv593760 CNV gain 21841781
nsv829868 CNV gain 17160897
nsv954414 CNV deletion 24416366

Additional Variant Information for CPEB2-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPEB2-DT
Leiden Open Variation Database (LOVD)
CPEB2-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CPEB2-DT Gene

Disorders for CPEB2-DT Gene

Additional Disease Information for CPEB2-DT

No disorders were found for CPEB2-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CPEB2-DT Gene

Publications for CPEB2-DT Gene

  1. Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations. (PMID: 24569950) Hatemi PK … Martin NG (Behavior genetics 2014) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for CPEB2-DT Gene

Sources for CPEB2-DT Gene