Aliases for CPB2-AS1 Gene

Subcategory (RNA class) for CPB2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for CPB2-AS1 Gene

  • CPB2 Antisense RNA 1 2 3 5
  • CPB2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CPB2-AS1 2 168
  • HSALNG0096857 167
  • NONHSAG013431 92
  • Lnc-LRRC63-3 168

External Ids for CPB2-AS1 Gene

Previous GeneCards Identifiers for CPB2-AS1 Gene

  • GC13P046670

Summaries for CPB2-AS1 Gene

GeneCards Summary for CPB2-AS1 Gene

CPB2-AS1 (CPB2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for CPB2-AS1 Gene

Additional gene information for CPB2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for CPB2-AS1 Gene

Genomics for CPB2-AS1 Gene

GeneHancer (GH) Regulatory Elements for CPB2-AS1 Gene

Promoters and enhancers for CPB2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J046051 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 512.1 -0.5 -493 4.8 ZBTB40 ZNF217 EP300 CTCF ZSCAN5C SIN3A NRF1 POLR2G GTF2E2 PHF8 CPB2-AS1 ZC3H13 lnc-CPB2-1 RF00017-1415 CPB2
GH13J046100 Enhancer 1.2 FANTOM5 Ensembl ENCODE 21.3 +48.3 48308 4.4 MEF2C FOXA2 ZNF316 NCOR1 MEF2B JUND BATF TAL1 TCF12 ATF2 CPB2-AS1 CPB2 ZC3H13
GH13J046109 Enhancer 0.9 ENCODE 20.3 +57.4 57391 0.8 EP300 POLR2G NCOR1 KDM6A TCF7 SKI TEAD1 ZBTB26 ZKSCAN8 CREB1 CPB2-AS1 ZC3H13 CPB2 RF00998-038
GH13J046113 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 5.3 +61.3 61308 3.2 ZIC2 ZNF592 FOSL1 ZNF395 FOS BHLHE40 ZNF384 MITF MEIS2 ZBTB33 ZC3H13 CPB2-AS1 LCP1 CPB2 RF00998-038 lnc-LCP1-1
GH13J046087 Enhancer 0.4 Ensembl 13.9 +35.3 35308 1.6 JUNB AGO2 RBFOX2 CPB2-AS1 ZC3H13 CPB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CPB2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CPB2-AS1 Gene

Genomic Locations for CPB2-AS1 Gene
chr13:46,052,493-46,161,379
(GRCh38/hg38)
Size:
108,887 bases
Orientation:
Plus strand
chr13:46,626,941-46,687,467
(GRCh37/hg19)
Size:
60,527 bases
Orientation:
Plus strand

Genomic View for CPB2-AS1 Gene

Genes around CPB2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPB2-AS1 Gene

Proteins for CPB2-AS1 Gene

Post-translational modifications for CPB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CPB2-AS1 Gene

Domains & Families for CPB2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CPB2-AS1 Gene

Function for CPB2-AS1 Gene

Phenotypes From GWAS Catalog for CPB2-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CPB2-AS1 Gene

Localization for CPB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CPB2-AS1 Gene

Pathways & Interactions for CPB2-AS1 Gene

PathCards logo

SuperPathways for CPB2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CPB2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CPB2-AS1 Gene

Drugs & Compounds for CPB2-AS1 Gene

No Compound Related Data Available

Transcripts for CPB2-AS1 Gene

mRNA/cDNA for CPB2-AS1 Gene

35 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
18 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
8 NONCODE transcripts :
18 LncBook transcripts :
18 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CPB2-AS1 Gene

No ASD Table

Relevant External Links for CPB2-AS1 Gene

GeneLoc Exon Structure for
CPB2-AS1

Expression for CPB2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CPB2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CPB2-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x7.6), Brain - Substantia nigra (x5.9), Brain - Putamen (basal ganglia) (x5.2), Brain - Amygdala (x5.1), and Brain - Hippocampus (x4.8).

SOURCE GeneReport for Unigene cluster for CPB2-AS1 Gene:

Hs.626139
genes like me logo Genes that share expression patterns with CPB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CPB2-AS1 Gene

Orthologs for CPB2-AS1 Gene

Evolution for CPB2-AS1 Gene

ENSEMBL:
Gene Tree for CPB2-AS1 (if available)
TreeFam:
Gene Tree for CPB2-AS1 (if available)

No data available for Orthologs for CPB2-AS1 Gene

Paralogs for CPB2-AS1 Gene

No data available for Paralogs for CPB2-AS1 Gene

Variants for CPB2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CPB2-AS1 Gene

SNP ID Clinical significance and condition Chr 13 pos Variation AA Info Type
710029 Benign: not provided 46,078,860(+) A/G SYNONYMOUS_VARIANT
713135 Likely Benign: not provided 46,064,709(+) A/G SYNONYMOUS_VARIANT
762353 Likely Benign: not provided 46,087,824(+) G/C INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for CPB2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CPB2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv223e201 CNV deletion 23290073
esv1459731 CNV insertion 17803354
esv1489617 CNV insertion 17803354
esv2673081 CNV deletion 23128226
esv2675321 CNV deletion 23128226
esv3306336 CNV mobile element insertion 20981092
esv3309352 CNV mobile element insertion 20981092
esv3332050 CNV insertion 20981092
esv3340783 CNV insertion 20981092
esv3631973 CNV loss 21293372
esv3631974 CNV loss 21293372
nsv455876 CNV gain 19166990
nsv561581 CNV gain 21841781
nsv820278 CNV loss 19587683
nsv832598 CNV gain 17160897

Additional Variant Information for CPB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPB2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CPB2-AS1 Gene

Disorders for CPB2-AS1 Gene

Additional Disease Information for CPB2-AS1

No disorders were found for CPB2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CPB2-AS1 Gene

Publications for CPB2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for CPB2-AS1 Gene

Sources for CPB2-AS1 Gene