Aliases for COX6CP17 Gene

Aliases for COX6CP17 Gene

  • Cytochrome C Oxidase Subunit 6C Pseudogene 17 2 3 5
  • Cytochrome C Oxidase Subunit VIc Pseudogene 17 2 3
  • COX6CP17 5

External Ids for COX6CP17 Gene

Previous GeneCards Identifiers for COX6CP17 Gene

  • GC00U934709

Summaries for COX6CP17 Gene

GeneCards Summary for COX6CP17 Gene

COX6CP17 (Cytochrome C Oxidase Subunit 6C Pseudogene 17) is a Pseudogene.

Additional gene information for COX6CP17 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for COX6CP17 Gene

Genomics for COX6CP17 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for COX6CP17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J007293 Enhancer 0.3 Ensembl 250.7 +1.5 1489 0.4 ZNF366 COX6CP17 SNORD129 SFMBT2 LOC107984203
GH10J007311 Enhancer 1.1 Ensembl ENCODE 0.4 -16.4 -16357 1.9 ZNF580 ATF2 ZNF10 ZIC2 CEBPB FEZF1 ZNF639 ZNF341 ZEB1 BHLHE40 piR-59804-002 COX6CP17 SFMBT2 LOC107984203
GH10J007302 Enhancer 0.9 ENCODE 0.4 -7.2 -7234 0.2 ZNF600 ZNF580 ATF2 ZNF10 BRCA1 ZIC2 CEBPB FEZF1 ZNF639 ZEB1 COX6CP17 piR-59804-002 SFMBT2 LOC107984203
GH10J007296 Enhancer 0.6 Ensembl 0.7 -2.5 -2511 1.6 ZNF10 ZIC2 PAX8 FOXM1 ZNF512B SCRT1 NFATC1 ZNF768 KDM1A SCRT2 COX6CP17 piR-59804-002 SFMBT2 LOC107984203
GH10J007268 Enhancer 0.9 Ensembl ENCODE 0.4 +24.3 24289 4.8 ZNF600 ZEB1 CTBP1 ZNF843 PRDM6 GATA3 TCF7L2 ZNF217 ZBTB1 INSM2 SFMBT2 COX6CP17 SNORD129 LOC107984203
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around COX6CP17 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for COX6CP17 Gene

Latest Assembly
chr10:7,294,977-7,295,290
(GRCh38/hg38)
Size:
314 bases
Orientation:
Minus strand

Previous Assembly
chr10:7,336,939-7,337,235
(GRCh37/hg19 by Entrez Gene)
Size:
297 bases
Orientation:
Minus strand

chr10:7,337,068-7,337,252
(GRCh37/hg19 by Ensembl)
Size:
185 bases
Orientation:
Minus strand

Genomic View for COX6CP17 Gene

Genes around COX6CP17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COX6CP17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COX6CP17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COX6CP17 Gene

Proteins for COX6CP17 Gene

Post-translational modifications for COX6CP17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COX6CP17 Gene

Domains & Families for COX6CP17 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for COX6CP17 Gene

Function for COX6CP17 Gene

Phenotypes From GWAS Catalog for COX6CP17 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COX6CP17 Gene

Localization for COX6CP17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COX6CP17 Gene

Pathways & Interactions for COX6CP17 Gene

PathCards logo

SuperPathways for COX6CP17 Gene

No Data Available

Gene Ontology (GO) - Biological Process for COX6CP17 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for COX6CP17 Gene

Drugs & Compounds for COX6CP17 Gene

No Compound Related Data Available

Transcripts for COX6CP17 Gene

mRNA/cDNA for COX6CP17 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for COX6CP17 Gene

No ASD Table

Relevant External Links for COX6CP17 Gene

GeneLoc Exon Structure for
COX6CP17

Expression for COX6CP17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for COX6CP17 Gene

genes like me logo Genes that share expression patterns with COX6CP17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COX6CP17 Gene

Orthologs for COX6CP17 Gene

Evolution for COX6CP17 Gene

ENSEMBL:
Gene Tree for COX6CP17 (if available)
TreeFam:
Gene Tree for COX6CP17 (if available)
Alliance of Genome Resources:
Additional Orthologs for COX6CP17

No data available for Orthologs for COX6CP17 Gene

Paralogs for COX6CP17 Gene

No data available for Paralogs for COX6CP17 Gene

Variants for COX6CP17 Gene

Additional Variant Information for COX6CP17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COX6CP17
Leiden Open Variation Database (LOVD)
COX6CP17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COX6CP17 Gene

Disorders for COX6CP17 Gene

No disorders were found for COX6CP17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for COX6CP17 Gene

Publications for COX6CP17 Gene

No publications were found for COX6CP17 Gene.

No data available for Mastermind for COX6CP17 Gene

Products for COX6CP17 Gene

Sources for COX6CP17 Gene