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COX6CP1 Gene(Pseudogene)

Cytochrome C Oxidase Subunit 6C Pseudogene 1

GCID:
GC16M011904
GIFtS:
13
Genes Participants
UDN Logo

Aliases for COX6CP1 Gene

Aliases for COX6CP1 Gene

  • Cytochrome C Oxidase Subunit 6C Pseudogene 1 2 3 5
  • Cytochrome C Oxidase Subunit VIc Pseudogene 1 2

External Ids for COX6CP1 Gene

Previous GeneCards Identifiers for COX6CP1 Gene

  • GC16U990079
  • GC16M011964
  • GC16M011905
  • GC16M011997

Summaries for COX6CP1 Gene

GeneCards Summary for COX6CP1 Gene

COX6CP1 (Cytochrome C Oxidase Subunit 6C Pseudogene 1) is a Pseudogene.

Additional gene information for COX6CP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COX6CP1 Gene

Genomics for COX6CP1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for COX6CP1 Gene

Promoters and enhancers for COX6CP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16I011904 Promoter 0.6 EPDnew 550.8 0.0 -20 0.1 POLR2A COX6CP1 GC16M011903 GSPT1 ENSG00000261216
GH16I012799 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 42.7 -897.8 -897833 5 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 CPPED1 ENSG00000261560 LOC105371084 COX6CP1 NPIPB2 ENSG00000261216 SNX29 LOC105371089
GH16I011639 Enhancer 2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 34.5 +263.5 263535 3.3 PKNOX1 FOXA2 ARID4B NEUROD1 SIN3A YBX1 DMAP1 ZNF2 YY1 SLC30A9 LOC105371084 HNRNPCP4 ENSG00000261560 LITAF COX6CP1 ZC3H7A ENSG00000261216 TXNDC11 NPIPB2 SOCS1
GH16I012061 Enhancer 1.3 Ensembl ENCODE dbSUPER 51.4 -158.6 -158573 2.5 ZNF493 ZFP64 BRCA1 ZNF213 ZNF143 KLF7 FOS ZNF202 ZC3H11A REST LOC105371084 ENSG00000261560 HNRNPCP4 ZC3H7A NPIPB2 COX6CP1 ENSG00000261216 SOCS1 TXNDC11 RSL1D1
GH16I011344 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.5 +558.8 558820 1.8 PKNOX1 CLOCK FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 RMI2 LOC105371083 LOC105371084 ENSG00000261560 GSPT1 ZC3H7A SOCS1 HNRNPCP4 RSL1D1 PRM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around COX6CP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COX6CP1 Gene

Genomic Locations for COX6CP1 Gene
chr16:11,903,801-11,904,193
(GRCh38/hg38)
Size:
393 bases
Orientation:
Minus strand
chr16:11,997,658-11,998,050
(GRCh37/hg19)

Genomic View for COX6CP1 Gene

Genes around COX6CP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COX6CP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COX6CP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for COX6CP1 Gene

Proteins for COX6CP1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for COX6CP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COX6CP1 Gene

Domains & Families for COX6CP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COX6CP1 Gene

Function for COX6CP1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for COX6CP1 Gene

GENATLAS Biochemistry:
cytochrome c oxidase,subunit VIc,component of the complex IV,terminal enzyme complex for electron transfer,oxidative phosphorylation (OXPHOS),inner mitochondrial membrane,pseudogene 1

Phenotypes From GWAS Catalog for COX6CP1 Gene

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COX6CP1 Gene

Localization for COX6CP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COX6CP1 Gene

Pathways & Interactions for COX6CP1 Gene

SuperPathways for COX6CP1 Gene

PathCards logo More details on SuperPathways for COX6CP1
No Data Available

Interacting Proteins for COX6CP1 Gene

Gene Ontology (GO) - Biological Process for COX6CP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COX6CP1 Gene

Drugs & Compounds for COX6CP1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for COX6CP1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for COX6CP1 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COX6CP1 Gene

No ASD Table

Relevant External Links for COX6CP1 Gene

GeneLoc Exon Structure for
COX6CP1
ECgene alternative splicing isoforms for
COX6CP1

Expression for COX6CP1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COX6CP1 Gene

mRNA expression in normal human tissues for COX6CP1 Gene
mRNA expression by GTEx for COX6CP1 GenemRNA expression by BioGPS for COX6CP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of COX6CP1 Gene:

COX6CP1
genes like me logo Genes that share expression patterns with COX6CP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COX6CP1 Gene

Orthologs for COX6CP1 Gene

Evolution for COX6CP1 Gene

ENSEMBL:
Gene Tree for COX6CP1 (if available)
TreeFam:
Gene Tree for COX6CP1 (if available)

No data available for Orthologs for COX6CP1 Gene

Paralogs for COX6CP1 Gene

No data available for Paralogs for COX6CP1 Gene

Variants for COX6CP1 Gene

Additional Variant Information for COX6CP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COX6CP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COX6CP1 Gene

Disorders for COX6CP1 Gene

Additional Disease Information for COX6CP1

Genetic Association Database
(GAD)

No disorders were found for COX6CP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COX6CP1 Gene

Publications for COX6CP1 Gene

  1. Assignment of the human genes coding for cytochrome c oxidase subunits Va (COX5A), VIc (COX6C) and VIIc (COX7C) to chromosome bands 15q25, 8q22-->q23 and 5q14 and of three pseudogenes (COX5AP1, COX6CP1, COX7CP1) to 14q22, 16p12 and 13q14-->q21 by FISH and radiation hybrid mapping. (PMID: 10072584) Hofmann S … Meitinger T (Cytogenetics and cell genetics 1998) 2 3 58
  2. Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways. (PMID: 22267201) Stolk L … Lunetta KL (Nature genetics 2012) 44 58

Products for COX6CP1 Gene

Sources for COX6CP1 Gene

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