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Aliases for COX6A1P2 Gene

Aliases for COX6A1P2 Gene

  • Cytochrome C Oxidase Subunit 6A1 Pseudogene 2 2 3 5
  • Cytochrome C Oxidase Subunit VIa Polypeptide 1 Pseudogene 2 2

External Ids for COX6A1P2 Gene

Previous GeneCards Identifiers for COX6A1P2 Gene

  • GC06P037121
  • GC06P037124
  • GC06P037125
  • GC06P037012
  • GC06P036730
  • GC06P037173
  • GC06P037183
  • GC06P037802
  • GC06P038424
  • GC06P039014
  • GC06P039602
  • GC06P040162

Summaries for COX6A1P2 Gene

GeneCards Summary for COX6A1P2 Gene

COX6A1P2 (Cytochrome C Oxidase Subunit 6A1 Pseudogene 2) is a Pseudogene.

Additional gene information for COX6A1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COX6A1P2 Gene

Genomics for COX6A1P2 Gene

GeneHancer (GH) Regulatory Elements for COX6A1P2 Gene

Promoters and enhancers for COX6A1P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I037044 Promoter/Enhancer 1.4 EPDnew Ensembl dbSUPER 550.8 +0.2 168 0.4 ZBTB33 CHAMP1 COX6A1P2 GC06P042411
GH06I037168 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 12.1 +128.4 128362 10.2 CLOCK MLX FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF263 SP3 PIM1 SRSF3 CMTR1 BRPF3 STK38 COX6A1P2 FGD2 MTCH1 TBC1D22B PIR49359
GH06I037238 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.9 +197.9 197941 8.7 FEZF1 DMAP1 IRF4 YY1 SP3 NFYC MEF2D ZNF610 GLIS1 RCOR2 TMEM217 SRSF3 COX6A1P2 FGD2 RNF8 TBC1D22B PIR49359 GC06P042411
GH06I037101 Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +59.8 59764 7.2 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF263 SP3 SSRP1 ZNF610 PIM1 FGD2 COX6A1P2 TBC1D22B SRSF3 TMEM217 RNF8 CDKN1A CMTR1 GC06P042396
GH06I037082 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +39.0 38986 2.8 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B DMAP1 YY1 SLC30A9 SRSF3 PIM1 COX6A1P2 FGD2 MTCH1 PPIL1 TMEM217 CDKN1A TBC1D22B GC06P042411
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around COX6A1P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COX6A1P2 Gene

Genomic Locations for COX6A1P2 Gene
chr6:37,044,831-37,045,382
(GRCh38/hg38)
Size:
552 bases
Orientation:
Plus strand
chr6:37,012,607-37,013,177
(GRCh37/hg19)

Genomic View for COX6A1P2 Gene

Genes around COX6A1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COX6A1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COX6A1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COX6A1P2 Gene

Proteins for COX6A1P2 Gene

Post-translational modifications for COX6A1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COX6A1P2 Gene

Domains & Families for COX6A1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COX6A1P2 Gene

Function for COX6A1P2 Gene

Phenotypes From GWAS Catalog for COX6A1P2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for COX6A1P2 Gene

Localization for COX6A1P2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for COX6A1P2 gene
Compartment Confidence
mitochondrion 3
plasma membrane 1
extracellular 1
peroxisome 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COX6A1P2 Gene

Pathways & Interactions for COX6A1P2 Gene

SuperPathways for COX6A1P2 Gene

No Data Available

Interacting Proteins for COX6A1P2 Gene

Gene Ontology (GO) - Biological Process for COX6A1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COX6A1P2 Gene

Drugs & Compounds for COX6A1P2 Gene

No Compound Related Data Available

Transcripts for COX6A1P2 Gene

mRNA/cDNA for COX6A1P2 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COX6A1P2 Gene

No ASD Table

Relevant External Links for COX6A1P2 Gene

GeneLoc Exon Structure for
COX6A1P2
ECgene alternative splicing isoforms for
COX6A1P2

Expression for COX6A1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COX6A1P2 Gene

Protein differential expression in normal tissues from HIPED for COX6A1P2 Gene

This gene is overexpressed in Brain (59.4) and Heart (9.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for COX6A1P2 Gene



Protein tissue co-expression partners for COX6A1P2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of COX6A1P2 Gene:

COX6A1P2

Evidence on tissue expression from TISSUES for COX6A1P2 Gene

  • Kidney(2.1)
  • Stomach(2)
genes like me logo Genes that share expression patterns with COX6A1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for COX6A1P2 Gene

Orthologs for COX6A1P2 Gene

This gene was present in the common ancestor of animals.

Orthologs for COX6A1P2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia COX6A1P2 34
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia COX6A1 34
  • 84 (a)
ManyToMany
-- 34
  • 83 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Cox6a1 34
  • 79 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 34
  • 70 (a)
ManyToMany
-- 34
  • 70 (a)
ManyToMany
-- 34
  • 39 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 61 (a)
OneToMany
chicken
(Gallus gallus)
Aves COX6A1 34
  • 62 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 64 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii cox6a1 34
  • 56 (a)
OneToMany
nszf-e250 33
fruit fly
(Drosophila melanogaster)
Insecta levy 34
  • 45 (a)
ManyToMany
CG30093 34
  • 43 (a)
ManyToMany
CG14077 34
  • 14 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea tag-174 34
  • 26 (a)
OneToMany
Species where no ortholog for COX6A1P2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for COX6A1P2 Gene

ENSEMBL:
Gene Tree for COX6A1P2 (if available)
TreeFam:
Gene Tree for COX6A1P2 (if available)

Paralogs for COX6A1P2 Gene

(2) SIMAP similar genes for COX6A1P2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with COX6A1P2: view

No data available for Paralogs for COX6A1P2 Gene

Variants for COX6A1P2 Gene

Variation tolerance for COX6A1P2 Gene

Gene Damage Index Score: 2.91; 48.87% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for COX6A1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COX6A1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for COX6A1P2 Gene

Disorders for COX6A1P2 Gene

No disorders were found for COX6A1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for COX6A1P2 Gene

Publications for COX6A1P2 Gene

  1. Cloning, characterization, and chromosomal localization of human liver form cytochrome c oxidase subunit VIa related genes. (PMID: 9202413) Merante F … Robinson BH (Genome 1997) 3 58
  2. Assignment of COX6A1 to 6p21 and a pseudogene (COX6A1P) to 1p31.1 by in situ hybridization and somatic cell hybrids. (PMID: 9284905) Hey Y … Varley JM (Cytogenetics and cell genetics 1997) 3 58

Products for COX6A1P2 Gene

Sources for COX6A1P2 Gene

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