Free for academic non-profit institutions. Other users need a Commercial license

Aliases for COX5AP1 Gene

Aliases for COX5AP1 Gene

  • Cytochrome C Oxidase Subunit 5A Pseudogene 1 2 3
  • Cytochrome C Oxidase Subunit Va Pseudogene 1 2
  • AL158801.4 5

External Ids for COX5AP1 Gene

Previous GeneCards Identifiers for COX5AP1 Gene

  • GC14U990077
  • GC14M053697
  • GC14M054777
  • GC14M055707

Summaries for COX5AP1 Gene

GeneCards Summary for COX5AP1 Gene

COX5AP1 (Cytochrome C Oxidase Subunit 5A Pseudogene 1) is a Pseudogene.

Additional gene information for COX5AP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COX5AP1 Gene

Genomics for COX5AP1 Gene

GeneHancer (GH) Regulatory Elements for COX5AP1 Gene

Promoters and enhancers for COX5AP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I055241 Promoter 0.6 EPDnew 550.8 +0.0 47 0.1 EZH2 COX5AP1 GC14M055241 GC14M054989
GH14I055240 Enhancer 0.4 ENCODE 550.8 +0.2 249 0.1 USF1 EZH2 GC14M055241 COX5AP1 UBE2L1 GC14M054989
GH14I055245 Enhancer 0.5 ENCODE 0.8 -4.7 -4721 0.1 SMARCA5 CTCF PKNOX1 TRIM22 ZNF143 REST RAD21 FBXO34 COX5AP1 GC14M054989
GH14I055265 Enhancer 0.8 FANTOM5 ENCODE 0.3 -24.3 -24260 0.3 CTCF SRF ZBTB40 GABPA GABPB1 CREB1 CREM SPI1 GCH1 FBXO34 LGALS3 MAPK1IP1L LOC105370509 COX5AP1 GC14M054989
GH14I055249 Enhancer 0.4 FANTOM5 0.4 -8.5 -8459 0.3 FOSL1 TAF9B FBXO34 COX5AP1 GC14M054989
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around COX5AP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COX5AP1 Gene

Genomic Locations for COX5AP1 Gene
chr14:55,240,439-55,241,157
(GRCh38/hg38)
Size:
719 bases
Orientation:
Minus strand
chr14:55,707,157-55,707,875
(GRCh37/hg19)

Genomic View for COX5AP1 Gene

Genes around COX5AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COX5AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COX5AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COX5AP1 Gene

Proteins for COX5AP1 Gene

Post-translational modifications for COX5AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COX5AP1 Gene

Domains & Families for COX5AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COX5AP1 Gene

Function for COX5AP1 Gene

Molecular function for COX5AP1 Gene

GENATLAS Biochemistry:
cytochrome c oxidase,subunit Va,component of the complex IV,terminal enzyme complex for electron transfer,oxidative phosphorylation (OXPHOS),inner mitochondrial membrane,pseudogene 1

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COX5AP1 Gene

Localization for COX5AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COX5AP1 Gene

Pathways & Interactions for COX5AP1 Gene

SuperPathways for COX5AP1 Gene

No Data Available

Interacting Proteins for COX5AP1 Gene

Gene Ontology (GO) - Biological Process for COX5AP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COX5AP1 Gene

Drugs & Compounds for COX5AP1 Gene

No Compound Related Data Available

Transcripts for COX5AP1 Gene

mRNA/cDNA for COX5AP1 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COX5AP1 Gene

No ASD Table

Relevant External Links for COX5AP1 Gene

GeneLoc Exon Structure for
COX5AP1
ECgene alternative splicing isoforms for
COX5AP1

Expression for COX5AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COX5AP1 Gene

mRNA differential expression in normal tissues according to GTEx for COX5AP1 Gene

This gene is overexpressed in Testis (x30.6).

NURSA nuclear receptor signaling pathways regulating expression of COX5AP1 Gene:

COX5AP1
genes like me logo Genes that share expression patterns with COX5AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COX5AP1 Gene

Orthologs for COX5AP1 Gene

Evolution for COX5AP1 Gene

ENSEMBL:
Gene Tree for COX5AP1 (if available)
TreeFam:
Gene Tree for COX5AP1 (if available)

No data available for Orthologs for COX5AP1 Gene

Paralogs for COX5AP1 Gene

No data available for Paralogs for COX5AP1 Gene

Variants for COX5AP1 Gene

Additional Variant Information for COX5AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COX5AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COX5AP1 Gene

Disorders for COX5AP1 Gene

No disorders were found for COX5AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for COX5AP1 Gene

Publications for COX5AP1 Gene

  1. Assignment of the human genes coding for cytochrome c oxidase subunits Va (COX5A), VIc (COX6C) and VIIc (COX7C) to chromosome bands 15q25, 8q22-->q23 and 5q14 and of three pseudogenes (COX5AP1, COX6CP1, COX7CP1) to 14q22, 16p12 and 13q14-->q21 by FISH and radiation hybrid mapping. (PMID: 10072584) Hofmann S … Meitinger T (Cytogenetics and cell genetics 1998) 2 3 58

Products for COX5AP1 Gene

Sources for COX5AP1 Gene

Content
Loading form....