Aliases for COX20P1 Gene

Aliases for COX20P1 Gene

  • COX20 Pseudogene 1 2 3 5
  • Family With Sequence Similarity 36, Member B (Pseudogene) 2 3
  • BA119F7.2 2 3
  • COX20, Cytochrome C Oxidase Assembly Factor Pseudogene 1 3
  • COX20 Cytochrome C Oxidase Assembly Factor Pseudogene 1 2
  • Family With Sequence Similarity 36, Member A Pseudogene 3
  • COX20 Cox2 Chaperone Homolog Pseudogene 1 3
  • COX20P1 5
  • FAM36B 3

External Ids for COX20P1 Gene

Previous HGNC Symbols for COX20P1 Gene

  • FAM36B

Previous GeneCards Identifiers for COX20P1 Gene

  • GC10U901591
  • GC10P070394

Summaries for COX20P1 Gene

GeneCards Summary for COX20P1 Gene

COX20P1 (COX20 Pseudogene 1) is a Pseudogene.

Additional gene information for COX20P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for COX20P1 Gene

Genomics for COX20P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for COX20P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J068630 Enhancer 0.5 ENCODE 250.7 -0.8 -790 2 CEBPB PRDM6 BCL6 ZBTB33 GLIS1 ZNF202 SPI1 COX20P1 lnc-CCAR1-4 CCAR1 STOX1 DDX50 SIRT1 HNRNPH3 HERC4 KIFBP ATOH7
GH10J068633 Enhancer 0.3 Ensembl 250.7 +1.8 1764 0.2 FOXA1 COX20P1 lnc-CCAR1-4 RPS3AP37 TET1 CCAR1
GH10J068627 Enhancer 0.5 Ensembl 0.7 -3.6 -3636 1.4 ZNF10 NFIC REST PRDM4 ZNF558 RUNX3 MIER1 DNA2 STOX1 KIFBP COX20P1 piR-56497-012 TET1 CCAR1
GH10J068617 Enhancer 0.6 ENCODE 0.4 -13.9 -13925 2.3 FOXA2 ZFP91 HDAC2 FOXA1 ZNF384 HDAC1 CEBPB ATF1 KDM1A SOX6 STOX1 KIFBP DNA2 COX20P1 piR-56497-012 TET1 CCAR1
GH10J068624 Enhancer 0.5 Ensembl 0.4 -6.7 -6737 1.6 NFIC ZNF2 ZBTB33 HLF ZNF512 STOX1 KIFBP DNA2 MYPN COX20P1 piR-56497-012 TET1 CCAR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around COX20P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for COX20P1 Gene

Latest Assembly
chr10:68,632,337-68,632,836
(GRCh38/hg38)
Size:
500 bases
Orientation:
Plus strand

Previous Assembly
chr10:70,392,094-70,392,593
(GRCh37/hg19 by Entrez Gene)
Size:
500 bases
Orientation:
Plus strand

chr10:70,392,128-70,392,484
(GRCh37/hg19 by Ensembl)
Size:
357 bases
Orientation:
Plus strand

Genomic View for COX20P1 Gene

Genes around COX20P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COX20P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COX20P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COX20P1 Gene

Proteins for COX20P1 Gene

Post-translational modifications for COX20P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COX20P1 Gene

Domains & Families for COX20P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for COX20P1 Gene

Function for COX20P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COX20P1 Gene

Localization for COX20P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COX20P1 Gene

Pathways & Interactions for COX20P1 Gene

PathCards logo

SuperPathways for COX20P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for COX20P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for COX20P1 Gene

Drugs & Compounds for COX20P1 Gene

No Compound Related Data Available

Transcripts for COX20P1 Gene

mRNA/cDNA for COX20P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for COX20P1 Gene

No ASD Table

Relevant External Links for COX20P1 Gene

GeneLoc Exon Structure for
COX20P1

Expression for COX20P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for COX20P1 Gene

genes like me logo Genes that share expression patterns with COX20P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COX20P1 Gene

Orthologs for COX20P1 Gene

Evolution for COX20P1 Gene

ENSEMBL:
Gene Tree for COX20P1 (if available)
TreeFam:
Gene Tree for COX20P1 (if available)
Alliance of Genome Resources:
Additional Orthologs for COX20P1

No data available for Orthologs for COX20P1 Gene

Paralogs for COX20P1 Gene

No data available for Paralogs for COX20P1 Gene

Variants for COX20P1 Gene

Additional Variant Information for COX20P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COX20P1
Leiden Open Variation Database (LOVD)
COX20P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COX20P1 Gene

Disorders for COX20P1 Gene

No disorders were found for COX20P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for COX20P1 Gene

Publications for COX20P1 Gene

No publications were found for COX20P1 Gene.

No data available for Mastermind for COX20P1 Gene

Products for COX20P1 Gene

Sources for COX20P1 Gene