Aliases for COX10-AS1 Gene

Subcategory (RNA class) for COX10-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for COX10-AS1 Gene

  • COX10 Antisense RNA 1 2 3 5
  • COX10 Antisense RNA 1 (Non-Protein Coding) 2 3
  • COX10 Antisense RNA (Non-Protein Coding) 2 3
  • COX10-AS1 2 168
  • HSALNG0114686 167
  • NONHSAG020869 92
  • COX10-AS 3
  • COX10AS 3

External Ids for COX10-AS1 Gene

Previous HGNC Symbols for COX10-AS1 Gene

  • COX10AS
  • COX10-AS

Previous GeneCards Identifiers for COX10-AS1 Gene

  • GC00U931383
  • GC17M013934
  • GC17M013659

Summaries for COX10-AS1 Gene

GeneCards Summary for COX10-AS1 Gene

COX10-AS1 (COX10 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with COX10-AS1 include Leigh Syndrome.

Additional gene information for COX10-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for COX10-AS1 Gene

Genomics for COX10-AS1 Gene

GeneHancer (GH) Regulatory Elements for COX10-AS1 Gene

Promoters and enhancers for COX10-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J014068 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 510.9 -0.3 -261 3.5 RXRA ZBTB40 ZNF217 EP300 SIN3A TCF12 POLR2G SP1 PHF8 ZFX COX10-AS1 COX10 CDRT15 CDRT15P1 RPS18P12 piR-50437-271
GH17J014372 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas 10.3 -304.0 -304037 2.9 EP300 FOXK2 POLR2G NCOR1 TEAD4 KDM6A ZBTB11 TCF7 MYC TGIF2 ENSG00000230647 RPS18P12 COX10-AS1 ENSG00000266378
GH17J013888 Enhancer 0.7 Ensembl 11.5 +181.2 181195 0.2 ZNF300 ZNF510 ZNF662 ZNF491 ZNF195 NFIC ZNF184 ZNF112 ZNF513 ZNF189 COX10-AS1 LOC100506974 lnc-HS3ST3A1-7
GH17J013930 Enhancer 0.8 FANTOM5 ENCODE 8.9 +137.9 137933 2.9 USF1 ATF2 CREB1 FOS MEF2B SPI1 TBX21 SMARCA4 USF2 JUND COX10-AS1 ENSG00000233852 HS3ST3B1 piR-61137-001 piR-49097-044
GH17J014672 Enhancer 0.5 ENCODE 11.4 -603.6 -603574 0.1 TRIM28 CEBPB POLR2A ZNF791 SETDB1 CEBPG FOS STAT3 CEBPA ENSG00000266538 COX10-AS1 TVP23C PPIAP53 RPS18P12 piR-61945-197 piR-32331-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around COX10-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COX10-AS1 Gene

Genomic Locations for COX10-AS1 Gene
chr17:13,755,574-14,069,495
(GRCh38/hg38)
Size:
313,922 bases
Orientation:
Minus strand
chr17:13,659,795-13,972,812
(GRCh37/hg19)
Size:
313,018 bases
Orientation:
Minus strand

Genomic View for COX10-AS1 Gene

Genes around COX10-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COX10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COX10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COX10-AS1 Gene

Proteins for COX10-AS1 Gene

Post-translational modifications for COX10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COX10-AS1 Gene

Domains & Families for COX10-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for COX10-AS1 Gene

Function for COX10-AS1 Gene

Phenotypes From GWAS Catalog for COX10-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COX10-AS1 Gene

Localization for COX10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COX10-AS1 Gene

Pathways & Interactions for COX10-AS1 Gene

PathCards logo

SuperPathways for COX10-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for COX10-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for COX10-AS1 Gene

Drugs & Compounds for COX10-AS1 Gene

No Compound Related Data Available

Transcripts for COX10-AS1 Gene

mRNA/cDNA for COX10-AS1 Gene

45 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
19 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
14 NONCODE transcripts :
17 LncBook transcripts :
28 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for COX10-AS1 Gene

No ASD Table

Relevant External Links for COX10-AS1 Gene

GeneLoc Exon Structure for
COX10-AS1

Expression for COX10-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for COX10-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for COX10-AS1

SOURCE GeneReport for Unigene cluster for COX10-AS1 Gene:

Hs.720411
genes like me logo Genes that share expression patterns with COX10-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COX10-AS1 Gene

Orthologs for COX10-AS1 Gene

Evolution for COX10-AS1 Gene

ENSEMBL:
Gene Tree for COX10-AS1 (if available)
TreeFam:
Gene Tree for COX10-AS1 (if available)

No data available for Orthologs for COX10-AS1 Gene

Paralogs for COX10-AS1 Gene

No data available for Paralogs for COX10-AS1 Gene

Variants for COX10-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for COX10-AS1 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
673119 Benign: not provided 14,069,205(-) C/T
rs886052597 Uncertain Significance: Leigh syndrome; Hepatic failure, early-onset, and neurologic disorder due to cytochrome C oxidase deficiency 14,069,436(-) C/G NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for COX10-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for COX10-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2758675 CNV loss 17122850
esv3640012 CNV loss 21293372
esv3640013 CNV gain 21293372
nsv1055511 CNV loss 25217958
nsv1056267 CNV gain 25217958
nsv1989 CNV deletion 18451855
nsv574377 CNV gain 21841781
nsv978364 CNV duplication 23825009

Additional Variant Information for COX10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COX10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COX10-AS1 Gene

Disorders for COX10-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for COX10-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
leigh syndrome
  • ls
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for COX10-AS1

genes like me logo Genes that share disorders with COX10-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for COX10-AS1 Gene

Publications for COX10-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for COX10-AS1 Gene

Sources for COX10-AS1 Gene