Aliases for COPS5P2 Gene

Aliases for COPS5P2 Gene

  • COP9 Signalosome Subunit 5 Pseudogene 2 2 3 5
  • COPS5P2 5

External Ids for COPS5P2 Gene

Previous GeneCards Identifiers for COPS5P2 Gene

  • GC00U934369
  • GC12U902831

Summaries for COPS5P2 Gene

GeneCards Summary for COPS5P2 Gene

COPS5P2 (COP9 Signalosome Subunit 5 Pseudogene 2) is a Pseudogene.

Additional gene information for COPS5P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for COPS5P2 Gene

Genomics for COPS5P2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for COPS5P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J123441 Enhancer 0.7 FANTOM5 250.7 +0.1 81 0.4 EBF1 BHLHE40 ASH2L BATF IKZF1 MTA3 JUNB STAT1 POLR2A RAD51 COPS5P2 HSALNG0094731 lnc-RILPL2-1 DNAH10 RILPL2 SNRNP35
GH12J123443 Enhancer 0.5 dbSUPER 250.7 -1.1 -1099 1 SPI1 ZBTB33 CEBPB RUNX3 ZBTB40 MLLT1 COPS5P2 HSALNG0094731 lnc-RILPL2-1 RILPL2 ABCB9 DNAH10 HSALNG0094734 SNRNP35
GH12J123446 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.7 -4.1 -4130 1.6 ZNF217 FOXA2 CTBP1 PRDM6 GATA3 TCF7L2 SMARCE1 FOXA1 DPF2 ZNF398 RILPL1 ABCB9 SBNO1-AS1 RILPL2 COPS5P2 HSALNG0094734 SNRNP35
GH12J123447 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.1 -7097 2.3 CEBPA FOXA1 THAP11 CEBPB ZNF511 FOXA2 SMAD4 SAP130 ETV4 RARA HSALNG0094734 RILPL2 TMED2-DT CDK2AP1 DNAH10 SNRNP35 MTRFR COPS5P2
GH12J123444 Enhancer 0.7 ENCODE dbSUPER 0.7 -2.7 -2721 0.1 CEBPA CEBPB EP300 JUND TCF7L2 ZNF664 RFX1 KDM1A ARID3A JUN RILPL1 COPS5P2 HSALNG0094734 RILPL2 SNRNP35
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around COPS5P2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for COPS5P2 Gene

Latest Assembly
chr12:123,441,515-123,441,858
(GRCh38/hg38)
Size:
344 bases
Orientation:
Minus strand

Previous Assembly
chr12:123,926,062-123,926,405
(GRCh37/hg19 by Entrez Gene)
Size:
344 bases
Orientation:
Minus strand

chr12:123,926,064-123,926,399
(GRCh37/hg19 by Ensembl)
Size:
336 bases
Orientation:
Minus strand

Genomic View for COPS5P2 Gene

Genes around COPS5P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COPS5P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COPS5P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COPS5P2 Gene

Proteins for COPS5P2 Gene

Post-translational modifications for COPS5P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COPS5P2 Gene

Domains & Families for COPS5P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for COPS5P2 Gene

Function for COPS5P2 Gene

Phenotypes From GWAS Catalog for COPS5P2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COPS5P2 Gene

Localization for COPS5P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COPS5P2 Gene

Pathways & Interactions for COPS5P2 Gene

PathCards logo

SuperPathways for COPS5P2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for COPS5P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for COPS5P2 Gene

Drugs & Compounds for COPS5P2 Gene

No Compound Related Data Available

Transcripts for COPS5P2 Gene

mRNA/cDNA for COPS5P2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for COPS5P2 Gene

No ASD Table

Relevant External Links for COPS5P2 Gene

GeneLoc Exon Structure for
COPS5P2

Expression for COPS5P2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COPS5P2 Gene

Orthologs for COPS5P2 Gene

Evolution for COPS5P2 Gene

ENSEMBL:
Gene Tree for COPS5P2 (if available)
TreeFam:
Gene Tree for COPS5P2 (if available)

No data available for Orthologs for COPS5P2 Gene

Paralogs for COPS5P2 Gene

No data available for Paralogs for COPS5P2 Gene

Variants for COPS5P2 Gene

Additional Variant Information for COPS5P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COPS5P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COPS5P2 Gene

Disorders for COPS5P2 Gene

No disorders were found for COPS5P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for COPS5P2 Gene

Publications for COPS5P2 Gene

No publications were found for COPS5P2 Gene.

No data available for Mastermind for COPS5P2 Gene

Products for COPS5P2 Gene

Sources for COPS5P2 Gene