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Aliases for COPG2IT1 Gene

Subcategory (RNA class) for COPG2IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for COPG2IT1 Gene

  • COPG2 Imprinted Transcript 1 (Non-Protein Coding) 2 3
  • Coatomer Protein Complex, Subunit Gamma 2, Intronic Transcript 1 2 3
  • COPG2 Antisense RNA (Non-Protein Coding) 2 3
  • Copg2 Intronic Transcript 1 2 3
  • Non-Protein Coding RNA 170 2
  • DKFZP761N09121 3
  • NCRNA00170 3
  • COPG2AS 3
  • CIT1 3

External Ids for COPG2IT1 Gene

Previous GeneCards Identifiers for COPG2IT1 Gene

  • GC07U990274
  • GC07Pg29562
  • GC07P129563

Summaries for COPG2IT1 Gene

GeneCards Summary for COPG2IT1 Gene

COPG2IT1 (COPG2 Imprinted Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for COPG2IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COPG2IT1 Gene

Genomics for COPG2IT1 Gene

Genomic Locations for COPG2IT1 Gene

Genomic Locations for COPG2IT1 Gene
3,448 bases
Plus strand

Genomic View for COPG2IT1 Gene

Genes around COPG2IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COPG2IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COPG2IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COPG2IT1 Gene

No data available for GeneHancer (GH) Regulatory Elements for COPG2IT1 Gene

Proteins for COPG2IT1 Gene

Post-translational modifications for COPG2IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COPG2IT1 Gene

Domains & Families for COPG2IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COPG2IT1 Gene

Function for COPG2IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COPG2IT1 Gene

Localization for COPG2IT1 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for COPG2IT1 gene
Compartment Confidence
mitochondrion 2
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COPG2IT1 Gene

Pathways & Interactions for COPG2IT1 Gene

SuperPathways for COPG2IT1 Gene

No Data Available

Interacting Proteins for COPG2IT1 Gene

Gene Ontology (GO) - Biological Process for COPG2IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for COPG2IT1 Gene

Drugs & Compounds for COPG2IT1 Gene

No Compound Related Data Available

Transcripts for COPG2IT1 Gene

mRNA/cDNA for COPG2IT1 Gene

(3) Additional mRNA sequences :

Unigene Clusters for COPG2IT1 Gene

COPG2 imprinted transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COPG2IT1 Gene

No ASD Table

Relevant External Links for COPG2IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for COPG2IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COPG2IT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of COPG2IT1 Gene:


SOURCE GeneReport for Unigene cluster for COPG2IT1 Gene:

genes like me logo Genes that share expression patterns with COPG2IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COPG2IT1 Gene

Orthologs for COPG2IT1 Gene

No data available for Orthologs and Evolution for COPG2IT1 Gene

Paralogs for COPG2IT1 Gene

No data available for Paralogs for COPG2IT1 Gene

Variants for COPG2IT1 Gene

Sequence variations from dbSNP and Humsavar for COPG2IT1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000932486 -- 130,542,242(+) G/A upstream_transcript_variant
rs1000984871 -- 130,541,695(+) G/A upstream_transcript_variant
rs1001607668 -- 130,545,389(+) A/G non_coding_transcript_variant
rs1001659682 -- 130,544,986(+) T/C non_coding_transcript_variant
rs1002776126 -- 130,541,590(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for COPG2IT1 Gene

Variant ID Type Subtype PubMed ID
nsv831131 CNV loss 17160897
nsv831132 CNV gain+loss 17160897

Additional Variant Information for COPG2IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COPG2IT1 Gene

Disorders for COPG2IT1 Gene

Additional Disease Information for COPG2IT1

No disorders were found for COPG2IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COPG2IT1 Gene

Publications for COPG2IT1 Gene

  1. The novel gene, gamma2-COP (COPG2), in the 7q32 imprinted domain escapes genomic imprinting. (PMID: 10995575) Yamasaki K … Kishino T (Genomics 2000) 2 3 58
  2. Genomic imprinting disorders in humans: a mini-review. (PMID: 19844787) Butler MG (Journal of assisted reproduction and genetics 2009) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 3 58
  5. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B … Gibbs RA (Analytical biochemistry 1996) 3 58

Products for COPG2IT1 Gene

Sources for COPG2IT1 Gene

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