Aliases for COL8A1 Gene
Aliases for COL8A1 Gene
External Ids for COL8A1 Gene
- HGNC: 2215
- Entrez Gene: 1295
- Ensembl: ENSG00000144810
- OMIM: 120251
- UniProtKB: P27658
Previous HGNC Symbols for COL8A1 Gene
- C3orf7
Previous GeneCards Identifiers for COL8A1 Gene
- GC03P095979
- GC03M098636
- GC03P100638
- GC03P100678
- GC03P100840
- GC03P099357
- GC03P096725
Summaries for COL8A1 Gene
-
This gene encodes one of the two alpha chains of type VIII collagen. The gene product is a short chain collagen and a major component of the basement membrane of the corneal endothelium. The type VIII collagen fibril can be either a homo- or a heterotrimer. Alternatively spliced transcript variants encoding the same protein have been observed. [provided by RefSeq, Dec 2011]
GeneCards Summary for COL8A1 Gene
COL8A1 (Collagen Type VIII Alpha 1 Chain) is a Protein Coding gene. Diseases associated with COL8A1 include Corneal Dystrophy and Macular Degeneration, Age-Related, 1. Among its related pathways are Integrin Pathway and ERK Signaling. An important paralog of this gene is COL8A2.
UniProtKB/Swiss-Prot for COL8A1 Gene
-
Macromolecular component of the subendothelium. Major component of the Descemets membrane (basement membrane) of corneal endothelial cells. Also component of the endothelia of blood vessels. Necessary for migration and proliferation of vascular smooth muscle cells and thus, has a potential role in the maintenance of vessel wall integrity and structure, in particular in atherogenesis.
-
Vastatin, the C-terminal fragment comprising the NC1 domain, inhibits aortic endothelial cell proliferation and causes cell apoptosis.
Additional gene information for COL8A1 Gene
- Monarch Initiative
- Search for COL8A1 at DataMed
- Search for COL8A1 at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL8A1 Gene
Genomics for COL8A1 Gene
GeneHancer (GH) Regulatory Elements for COL8A1 Gene
Promoters and enhancers for COL8A1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH03I099636 | Promoter/Enhancer | 2.3 | EPDnew Ensembl ENCODE dbSUPER | 559.2 | +4.5 | 4454 | 12.8 | KLF17 BMI1 FEZF1 GLI4 BATF RAD21 ZNF335 ZNF366 SCRT2 ZNF143 | COL8A1 GC03M099636 GC03M099657 | |
| GH03I099698 | Promoter/Enhancer | 1.2 | EPDnew ENCODE dbSUPER | 554.1 | +61.7 | 61749 | 2.8 | MXI1 POLR2A JUN MAX MNT FOS ZBTB20 | COL8A1 TMEM45A GC03M099681 GC03M099723 | |
| GH03I099418 | Enhancer | 0.9 | FANTOM5 ENCODE | 16.9 | -219.2 | -219176 | 1.2 | PKNOX1 EBF1 ATF7 ZSCAN29 IKZF2 RUNX3 BCLAF1 SMARCA5 ZNF687 NR2F1 | COL8A1 GC03M099417 LOC105374004 | |
| GH03I099409 | Enhancer | 0.8 | Ensembl ENCODE | 16.9 | -227.4 | -227410 | 2.2 | PKNOX1 CBFB JUN NR2F1 ZBED1 EBF1 BATF ATF2 BCL11A NFATC1 | COL8A1 DCBLD2 GC03M099417 LOC105374004 | |
| GH03I099419 | Enhancer | 0.7 | ENCODE | 16.9 | -220.1 | -220120 | 0.7 | PKNOX1 EBF1 BATF IRF4 ATF7 ZSCAN29 ETV6 IKZF2 RUNX3 SMARCA5 | COL8A1 GC03M099417 LOC105374004 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around COL8A1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for COL8A1 Gene
Genomic Locations for COL8A1 Gene
- chr3:99,638,475-99,799,226
- (GRCh38/hg38)
- Size:
- 160,752 bases
- Orientation:
- Plus strand
- chr3:99,357,319-99,518,070
- (GRCh37/hg19)
Genomic View for COL8A1 Gene
Genes around COL8A1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 3q12.1 by Ensembl
- 3q12.1 by Entrez Gene
- 3q12.1 by HGNC
COL8A1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for COL8A1 Gene
Proteins for COL8A1 Gene
-
Protein details for COL8A1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P27658-CO8A1_HUMAN
- Recommended name:
- Collagen alpha-1(VIII) chain
- Protein Accession:
- P27658
- D3DN42
- Q53XI6
- Q96D07
Protein attributes for COL8A1 Gene
- Size:
- 744 amino acids
- Molecular mass:
- 73364 Da
- Quaternary structure:
-
- Homotrimers, or heterotrimers in association with alpha 2(VIII) type collagens. Four homotrimers can form a tetrahedron stabilized by central interacting C-terminal NC1 trimers.
- Miscellaneous:
-
- Four consecutive Gly-Pro-Pro triplets are present at the C-terminus of the triple-helical region. These may provide the high thermal stability of this region.
Protein Expression for COL8A1 Gene
Post-translational modifications for COL8A1 Gene
- Prolines at the third position of the tripeptide repeating unit (G-X-Y) are hydroxylated in some or all of the chains.
- Proteolytically cleaved by neutrophil elastase, in vitro. Proteolytic processing produces the C-terminal NC1 domain fragment, vastatin.
- Modification sites at PhosphoSitePlus
- Modification sites at neXtProt
Other Protein References for COL8A1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for COL8A1
- Novus Biologicals Antibodies for COL8A1
-
Abcam antibodies for COL8A1
-
Cloud-Clone Corp. Antibodies for COL8A1
- Invitrogen Antibodies for COL8A1
- Search GeneTex for Antibodies for COL8A1
Protein Products
-
OriGene Purified Proteins for COL8A1
- Search Origene for MassSpec and Protein Over-expression Lysates for COL8A1
- Origene Custom Protein Services for COL8A1
-
Cloud-Clone Corp. Proteins for COL8A1
- Search GeneTex for Proteins for COL8A1
-
ProSci Proteins for COL8A1
-
Abcam proteins for COL8A1
Assay Products
-
Cloud-Clone Corp. Assay Kits for COL8A1
No data available for DME Specific Peptides for COL8A1 Gene
Domains & Families for COL8A1 Gene
Gene Families for COL8A1 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Plasma proteins
- Predicted secreted proteins
Protein Domains for COL8A1 Gene
Suggested Antigen Peptide Sequences for COL8A1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for COL8A1 Gene
Function for COL8A1 Gene
Molecular function for COL8A1 Gene
- GENATLAS Biochemistry:
- collagen type VIII,alpha 1,short chain,component of Descemet membrane
- UniProtKB/Swiss-Prot Function:
- Macromolecular component of the subendothelium. Major component of the Descemets membrane (basement membrane) of corneal endothelial cells. Also component of the endothelia of blood vessels. Necessary for migration and proliferation of vascular smooth muscle cells and thus, has a potential role in the maintenance of vessel wall integrity and structure, in particular in atherogenesis.
- UniProtKB/Swiss-Prot Function:
- Vastatin, the C-terminal fragment comprising the NC1 domain, inhibits aortic endothelial cell proliferation and causes cell apoptosis.
- UniProtKB/Swiss-Prot Induction:
- Up-regulated during vascular injury, in atherosclerosis and in diabetes.
Phenotypes From GWAS Catalog for COL8A1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005515 | protein binding | IPI | 16189514 |
Phenotypes for COL8A1 Gene
- MGI mutant phenotypes for COL8A1:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for COL8A1:
-
- Increased vaccinia virus (VACV) infection
- Decreased viability in esophageal squamous lineage
- Increased shRNA abundance (Z-score > 2)
- Decreased IL-8 secretion
- Synthetic lethal with vaccinia virus (VACV) infection
- Increased shRNA abundance
- Decreased shRNA abundance (Z-score < -2)
- Increased shRNA abundance with PLX4720
Animal Models for COL8A1 Gene
- MGI Knock Outs for COL8A1:
-
- Col8a1 tm1Bjro
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for COL8A1
-
-
ViGene Biosciences lentiviral particle packaged cDNA for COL8A1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for COL8A1 gene
- Search ViGene Biosciences for COL8A1
CRISPR Products
-
OriGene CRISPR knockouts for COL8A1
- genomics-online: gRNA clones - Search results for 115 available COL8A1 gene related products
- Overview of 115 available COL8A1 gene related products
- Applied Biological Materials CRISPR for COL8A1
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for COL8A1
- GenScript: Design CRISPR guide RNA sequences for COL8A1
miRNA for COL8A1 Gene
- miRTarBase miRNAs that target COL8A1
-
- hsa-mir-6516-5p (MIRT461352)
- hsa-mir-4266 (MIRT461353)
- hsa-mir-455-3p (MIRT461354)
- hsa-mir-6086 (MIRT461355)
- hsa-mir-4451 (MIRT461356)
- hsa-mir-377-5p (MIRT461357)
- hsa-mir-98-5p (MIRT461358)
- hsa-mir-4458 (MIRT461359)
- hsa-mir-4500 (MIRT461360)
- hsa-let-7i-5p (MIRT461361)
- hsa-let-7g-5p (MIRT461362)
- hsa-let-7f-5p (MIRT461363)
- hsa-let-7e-5p (MIRT461364)
- hsa-let-7d-5p (MIRT461365)
- hsa-let-7c-5p (MIRT461366)
- hsa-let-7b-5p (MIRT461367)
- hsa-let-7a-5p (MIRT461368)
- hsa-mir-6831-5p (MIRT461369)
- hsa-mir-3927-3p (MIRT461370)
- hsa-mir-4779 (MIRT461371)
- hsa-mir-4695-5p (MIRT461372)
- hsa-mir-1277-5p (MIRT510123)
- hsa-mir-190a-3p (MIRT510124)
- hsa-mir-1295b-3p (MIRT510125)
- hsa-mir-5011-5p (MIRT510126)
- hsa-mir-4789-3p (MIRT510127)
- hsa-mir-8485 (MIRT519131)
- hsa-mir-3186-3p (MIRT612015)
- hsa-mir-3939 (MIRT612016)
- hsa-mir-6514-3p (MIRT675654)
- hsa-mir-7977 (MIRT675655)
- hsa-mir-24-3p (MIRT675656)
- hsa-mir-4284 (MIRT675657)
- hsa-mir-4743-5p (MIRT675658)
- hsa-mir-564 (MIRT675659)
- hsa-mir-6847-3p (MIRT675660)
- hsa-mir-6811-3p (MIRT675661)
- hsa-mir-214-5p (MIRT675662)
- hsa-mir-383-3p (MIRT675663)
miRNA Products
- Search ViGene Biosciences for COL8A1
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for COL8A1
- Browse OriGene Inhibitory RNA Products For COL8A1
- genomics-online: shRNA clones - Search results for 115 available COL8A1 gene related products
- Overview of 115 available COL8A1 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for COL8A1 gene
Clone Products
- Sino Biological Human cDNA Clone for COL8A1
- VectorBuilder custom plasmid, inducible vectors for COL8A1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for COL8A1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for COL8A1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
- ESI BIO PureStem ES-210, Ecto-ntu Progenitor for COL8A1
-
Horizon Cell Lines for COL8A1
-
ViGene Biosciences adenoviral particle packaged cDNA for COL8A1 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for COL8A1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for COL8A1 gene
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for COL8A1 Gene
Localization for COL8A1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for COL8A1 Gene
- Secreted, extracellular space, extracellular matrix, basement membrane.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| endoplasmic reticulum | 5 |
| plasma membrane | 1 |
| mitochondrion | 1 |
| peroxisome | 1 |
| cytosol | 1 |
- Vesicles (3)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005576 | extracellular region | TAS | -- |
| GO:0005578 | proteinaceous extracellular matrix | IEA | -- |
| GO:0005581 | collagen trimer | IEA | -- |
| GO:0005591 | collagen type VIII trimer | TAS | 2029894 |
| GO:0005604 | basement membrane | IEA | -- |
Pathways & Interactions for COL8A1 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Collagen chain trimerization | ||
| 2 | Integrin Pathway |
.67
.67
.56
|
.56
|
| 3 | ERK Signaling |
.61
.58
|
.49
|
| 4 | Phospholipase-C Pathway |
.56
|
|
| 5 | Degradation of the extracellular matrix | ||
Pathways by source for COL8A1 Gene
15 Qiagen pathways for COL8A1 Gene
Interacting Proteins for COL8A1 Gene
Selected Interacting proteins:
ENSP00000261037
P27658-CO8A1_HUMAN
for COL8A1 Gene via
STRING
IID
UniProtKB
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0001525 | angiogenesis | IEA | -- |
| GO:0007155 | cell adhesion | IEA | -- |
| GO:0010811 | positive regulation of cell-substrate adhesion | IEA | -- |
| GO:0030198 | extracellular matrix organization | TAS | -- |
| GO:0030574 | collagen catabolic process | TAS | -- |
No data available for SIGNOR curated interactions for COL8A1 Gene
Transcripts for COL8A1 Gene
mRNA/cDNA for COL8A1 Gene
- (2) REFSEQ mRNAs :
- (6) Additional mRNA sequences :
- (183) Selected AceView cDNA sequences:
- (8) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for COL8A1 Gene
CRISPR Products
-
OriGene CRISPR knockouts for COL8A1
- genomics-online: gRNA clones - Search results for 115 available COL8A1 gene related products
- Overview of 115 available COL8A1 gene related products
- Applied Biological Materials CRISPR for COL8A1
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for COL8A1
- GenScript: Design CRISPR guide RNA sequences for COL8A1
miRNA Products
- Search ViGene Biosciences for COL8A1
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for COL8A1
- Browse OriGene Inhibitory RNA Products For COL8A1
- genomics-online: shRNA clones - Search results for 115 available COL8A1 gene related products
- Overview of 115 available COL8A1 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for COL8A1 gene
Clone Products
- Sino Biological Human cDNA Clone for COL8A1
- VectorBuilder custom plasmid, inducible vectors for COL8A1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for COL8A1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for COL8A1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7a | · | 7b | · | 7c | · | 7d |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||||||||||||
| SP2: | |||||||||||||||||||||||||
| SP3: | - | - | - | ||||||||||||||||||||||
| SP4: | - | - | |||||||||||||||||||||||
| SP5: | |||||||||||||||||||||||||
| SP6: | - | - | - | - |
Expression for COL8A1 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Neural Tube (Nervous System)
- Bone (Muscoskeletal System)
- Limb (Muscoskeletal System)
- Brain (Nervous System)
- Umbilical Cord (Extraembryonic Tissues)
- Cartilage (Muscoskeletal System)
- Endothelium (Cardiovascular System)
-
Lung (Respiratory System)
- Chondrocytes Tracheal Cartilage
- Tracheal Cartilage
-
Peripheral Nervous System (Nervous System)
- Pro-myelinating Schwann Cells Peripheral Nerve Domain
- Immature Schwann Cells Peripheral Nerve Domain
- Blood (Hematopoietic System)
- Mesenchymal Stem Cells
-
Kidney (Urinary System)
- Metanephric Mesenchyme Cells Metanephric Mesenchyme
- Gut Tube (Gastrointestinal Tract)
- Heart (Cardiovascular System)
- Dermis (Integumentary System)
- Fibroblasts
- Lateral Plate Mesoderm (Gastrulation Derivatives)
- Paraxial Mesoderm (Gastrulation Derivatives)
- Eye (Sensory Organs)
- NULL (Uncategorized)
- Endoderm (Gastrulation Derivatives)
-
Thyroid (Endocrine System)
mRNA differential expression in normal tissues according to GTEx for COL8A1 Gene
This gene is overexpressed in Artery - Tibial (x10.1), Artery - Aorta (x9.9), and Artery - Coronary (x8.9).
This gene is overexpressed in Bone marrow mesenchymal stem cell (44.9) and Amniocyte (16.6).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for COL8A1 Gene
NURSA nuclear receptor signaling pathways regulating expression of COL8A1 Gene:
COL8A1SOURCE GeneReport for Unigene cluster for COL8A1 Gene:
Hs.654548mRNA Expression by UniProt/SwissProt for COL8A1 Gene:
P27658-CO8A1_HUMAN
Tissue specificity:
Expressed primarily in the subendothelium of large blood vessels. Also expressed in arterioles and venules in muscle, heart, kidney, spleen, umbilical cord, liver and lung and is also found in connective tissue layers around hair follicles, around nerve bundles in muscle, in the dura of the optic nerve, in cornea and sclera, and in the perichondrium of cartilaginous tissues. In the kidney, expressed in mesangial cells, glomerular endothelial cells, and tubular epithelial cells. Also expressed in mast cells, and in astrocytes during the repair process. Expressed in Descemets membrane. Specifically expressed in peritoneal fibroblasts and mesothelial cells.
Evidence on tissue expression from TISSUES for COL8A1 Gene
- Lung(4.3)
- Bone(3.1)
Primer Products
-
OriGene qPCR primer pairs and template standards for COL8A1
-
OriGene qPCR primer pairs for COL8A1
Gene Expression Assay Products
No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL8A1 Gene
Orthologs for COL8A1 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | COL8A1 33 34 |
|
||
| dog (Canis familiaris) |
Mammalia | COL8A1 33 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | COL8A1 34 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | COL8A1 33 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Col8a1 33 |
|
||
| mouse (Mus musculus) |
Mammalia | Col8a1 33 16 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | COL8A1 34 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | COL8A1 33 34 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | COL8A1 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | col8a1 33 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | Xl.12569 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | col8a1a 34 |
|
OneToMany | |
| col8a1b 33 34 |
|
||||
| wufb18b08 33 |
|
- Species where no ortholog for COL8A1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for COL8A1 Gene
Variants for COL8A1 Gene
| SNP ID | Clin | Chr 03 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs13081855 | not-provided, not provided | 99,762,695(+) | G/T | intron_variant | |
| rs1000021566 | -- | 99,738,959(+) | A/G | intron_variant | |
| rs1000030487 | -- | 99,646,904(+) | C/G | intron_variant | |
| rs1000032184 | -- | 99,690,209(+) | T/C | intron_variant | |
| rs1000059084 | -- | 99,649,691(+) | G/A | intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2658441 | CNV | deletion | 23128226 |
| esv2660038 | CNV | deletion | 23128226 |
| esv2666929 | CNV | deletion | 23128226 |
| esv3597151 | CNV | gain | 21293372 |
| esv3597154 | CNV | loss | 21293372 |
| esv3597155 | CNV | loss | 21293372 |
| esv3597157 | CNV | loss | 21293372 |
| nsv1151786 | CNV | duplication | 26484159 |
| nsv477338 | CNV | novel sequence insertion | 20440878 |
| nsv478220 | CNV | novel sequence insertion | 20440878 |
| nsv508231 | CNV | deletion | 20534489 |
| nsv822193 | CNV | loss | 20364138 |
Residual Variation Intolerance Score:
10.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.39;
27.42% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for COL8A1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- COL8A1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for COL8A1 Gene
Disorders for COL8A1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| corneal dystrophy |
|
|
| macular degeneration, age-related, 1 |
|
|
| fuchs' endothelial dystrophy |
|
|
Search COL8A1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for COL8A1
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for UniProtKB/Swiss-Prot and Genatlas for COL8A1 Gene
Publications for COL8A1 Gene
- The complete primary structure of the human alpha 1 (VIII) chain and assignment of its gene (COL8A1) to chromosome 3. (PMID: 2029894) Muragaki Y … Ninomiya Y (European journal of biochemistry 1991) 2 3 4 22 58
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
- Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC). (PMID: 20385826) Neale BM … Seddon JM (Proceedings of the National Academy of Sciences of the United States of America 2010) 3 44 58
- Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 44 58
- Distribution of COL8A2 and COL8A1 gene variants in Caucasian primary open angle glaucoma patients with thin central corneal thickness. (PMID: 21139683) Desronvil T … Wiggs JL (Molecular vision 2010) 3 44 58
Products for COL8A1 Gene
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- Mammalian expression: PiggyBac
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- antibodies-online: Search results for 57 available COL8A1 Antibodies ranked by validation data
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- genomics-online: cdna clones - Search results for 115 available COL8A1 gene related products
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- Overview of 115 available COL8A1 gene related products
Sources for COL8A1 Gene
- (1) GeneCards
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- (3) EntrezGene
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- (33) HomoloGene
- (34) PanEnsembl
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- (37) FlyBase
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- (39) Pseudogene
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- (55) miRBase
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- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
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- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
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- (82) Invitrogen
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- (84) Vector BioLabs
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- (92) COMPARTMENTS
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