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Aliases for COL5A1-AS1 Gene

Subcategory (RNA class) for COL5A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for COL5A1-AS1 Gene

  • COL5A1 Antisense RNA 1 2 3 4 5
  • COL5A1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C9orf104 3 4
  • Chromosome 9 Open Reading Frame 104 2
  • COL5A1 Antisense Gene Protein 1 4
  • BA54A22.4 3

External Ids for COL5A1-AS1 Gene

Previous HGNC Symbols for COL5A1-AS1 Gene

  • C9orf104

Previous GeneCards Identifiers for COL5A1-AS1 Gene

  • GC09M137542

Summaries for COL5A1-AS1 Gene

GeneCards Summary for COL5A1-AS1 Gene

COL5A1-AS1 (COL5A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for COL5A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL5A1-AS1 Gene

Genomics for COL5A1-AS1 Gene

GeneHancer (GH) Regulatory Elements for COL5A1-AS1 Gene

Promoters and enhancers for COL5A1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I133989 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.2 +660.6 660586 5.5 HDGF ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF207 ZNF143 ZNF548 VAV2 GC09P133992 BRD3 ENSG00000273249 GTF3C5 COL5A1-AS1 DBH COL5A1 SURF6 GC09M133983
GH09I135499 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.8 -848.0 -848049 3.8 CLOCK MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 POLR2B C9orf116 MRPS2 SDCCAG3 INPP5E SEC16A OLFM1 COL5A1 QSOX2 SNAPC4 COL5A1-AS1
GH09I134162 Promoter/Enhancer 1.6 Ensembl ENCODE 10.7 +488.5 488544 3.6 CLOCK ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC GC09P134164 GC09M134165 RNU6ATAC WDR5 BRD3 LOC100130548 REXO4 SURF6 ENSG00000273249 MED22
GH09I133886 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +764.3 764344 4.6 ELF3 PKNOX1 FOXA2 MLX ARID4B DMAP1 THRB ZNF48 RARA YY1 COL5A1-AS1 BRD3 COL5A1 CACFD1 GTF3C5 VAV2 GC09M133930 GC09P133784
GH09I134704 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -54.3 -54344 6.6 NFIB KLF17 FEZF1 ZNF335 GLIS2 ZNF366 RCOR1 ATF7 EGR2 OVOL3 COL5A1-AS1 COL5A1 GC09P134726
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around COL5A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COL5A1-AS1 Gene

Genomic Locations for COL5A1-AS1 Gene
chr9:134,649,385-134,653,029
(GRCh38/hg38)
Size:
3,645 bases
Orientation:
Minus strand
chr9:137,541,231-137,544,689
(GRCh37/hg19)

Genomic View for COL5A1-AS1 Gene

Genes around COL5A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL5A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL5A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL5A1-AS1 Gene

Proteins for COL5A1-AS1 Gene

  • Protein details for COL5A1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SY13-COAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by COL5A1-AS1
    Protein Accession:
    Q5SY13

    Protein attributes for COL5A1-AS1 Gene

    Size:
    56 amino acids
    Molecular mass:
    6588 Da
    Quaternary structure:
    No Data Available

neXtProt entry for COL5A1-AS1 Gene

Post-translational modifications for COL5A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL5A1-AS1 Gene

Domains & Families for COL5A1-AS1 Gene

Protein Domains for COL5A1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with COL5A1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL5A1-AS1 Gene

Function for COL5A1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL5A1-AS1 Gene

Localization for COL5A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COL5A1-AS1 Gene

Pathways & Interactions for COL5A1-AS1 Gene

SuperPathways for COL5A1-AS1 Gene

No Data Available

Interacting Proteins for COL5A1-AS1 Gene

Gene Ontology (GO) - Biological Process for COL5A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL5A1-AS1 Gene

Drugs & Compounds for COL5A1-AS1 Gene

No Compound Related Data Available

Transcripts for COL5A1-AS1 Gene

mRNA/cDNA for COL5A1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COL5A1-AS1 Gene

No ASD Table

Relevant External Links for COL5A1-AS1 Gene

GeneLoc Exon Structure for
COL5A1-AS1
ECgene alternative splicing isoforms for
COL5A1-AS1

Expression for COL5A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COL5A1-AS1 Gene

genes like me logo Genes that share expression patterns with COL5A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL5A1-AS1 Gene

Orthologs for COL5A1-AS1 Gene

Evolution for COL5A1-AS1 Gene

ENSEMBL:
Gene Tree for COL5A1-AS1 (if available)
TreeFam:
Gene Tree for COL5A1-AS1 (if available)

No data available for Orthologs for COL5A1-AS1 Gene

Paralogs for COL5A1-AS1 Gene

No data available for Paralogs for COL5A1-AS1 Gene

Variants for COL5A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for COL5A1-AS1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000384383 -- 134,653,372(-) G/A non_coding_transcript_variant
rs1000572479 -- 134,654,447(-) G/A upstream_transcript_variant
rs1000761673 -- 134,649,646(-) C/T intron_variant
rs1000988743 -- 134,650,008(-) G/A intron_variant
rs1001435887 -- 134,650,121(-) A/C intron_variant

Additional Variant Information for COL5A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL5A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COL5A1-AS1 Gene

Disorders for COL5A1-AS1 Gene

Additional Disease Information for COL5A1-AS1

No disorders were found for COL5A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL5A1-AS1 Gene

Publications for COL5A1-AS1 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 4 58

Products for COL5A1-AS1 Gene

Sources for COL5A1-AS1 Gene

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