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Aliases for COL4A2-AS2 Gene

Aliases for COL4A2-AS2 Gene

  • COL4A2 Antisense 2 2 3 5
  • COL4A2 Antisense RNA 2 (Non-Protein Coding) 2
  • COL4A2 Antisense RNA 2 2

External Ids for COL4A2-AS2 Gene

Previous GeneCards Identifiers for COL4A2-AS2 Gene

  • GC13U900855
  • GC13M111110

Summaries for COL4A2-AS2 Gene

GeneCards Summary for COL4A2-AS2 Gene

COL4A2-AS2 (COL4A2 Antisense 2) is a Protein Coding gene.

Additional gene information for COL4A2-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL4A2-AS2 Gene

Genomics for COL4A2-AS2 Gene

GeneHancer (GH) Regulatory Elements for COL4A2-AS2 Gene

Promoters and enhancers for COL4A2-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I110463 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -0.7 -719 0.9 HDGF NR2F1 EBF1 GLIS2 TARDBP IKZF1 NBN ATF7 RUNX3 IKZF2 COL4A2-AS2 RAB20 ANKRD10 ING1 COL4A2-AS1 COL4A2
GH13I110558 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 -97.7 -97708 4.9 FOXA2 MLX ARID4B ZNF48 YY1 GLIS2 GATA2 RUNX3 SP3 RXRA RAB20 COL4A2-AS2 COL4A2 ANKRD10 ING1 GC13P110514
GH13I110386 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +62.8 62782 28.3 PKNOX1 SIN3A FEZF1 ZNF2 YY1 ZNF143 FOS DEK JUNB REST GC13P110400 COL4A1 COL4A2 ANKRD10-IT1 COL4A2-AS2 ANKRD10 RAB20 ENSG00000275611
GH13I110523 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -64.5 -64488 8.5 HDGF ATF1 NFIB KLF17 RAD21 YY1 RCOR1 BCLAF1 IKZF2 RUNX3 RAB20 COL4A2-AS2 COL4A2 ANKRD10 NAXD ING1 GC13P110514
GH13I110505 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.2 -44.8 -44760 5.5 FOXA2 PKNOX1 ATF1 FEZF1 YY1 TCF12 ZNF766 GATA2 ARID2 RXRA COL4A2-AS1 COL4A2-AS2 COL4A2 RAB20 NAXD GC13P110514
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around COL4A2-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COL4A2-AS2 Gene

Genomic Locations for COL4A2-AS2 Gene
chr13:110,453,466-110,463,641
(GRCh38/hg38)
Size:
10,176 bases
Orientation:
Minus strand
chr13:111,108,743-111,115,634
(GRCh37/hg19)

Genomic View for COL4A2-AS2 Gene

Genes around COL4A2-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL4A2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL4A2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL4A2-AS2 Gene

Proteins for COL4A2-AS2 Gene

Post-translational modifications for COL4A2-AS2 Gene

No Post-translational modifications

Other Protein References for COL4A2-AS2 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for COL4A2-AS2 Gene

Domains & Families for COL4A2-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL4A2-AS2 Gene

Function for COL4A2-AS2 Gene

Phenotypes From GWAS Catalog for COL4A2-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL4A2-AS2 Gene

Localization for COL4A2-AS2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for COL4A2-AS2 gene
Compartment Confidence
nucleus 3
mitochondrion 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COL4A2-AS2 Gene

Pathways & Interactions for COL4A2-AS2 Gene

SuperPathways for COL4A2-AS2 Gene

No Data Available

Interacting Proteins for COL4A2-AS2 Gene

Gene Ontology (GO) - Biological Process for COL4A2-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL4A2-AS2 Gene

Drugs & Compounds for COL4A2-AS2 Gene

No Compound Related Data Available

Transcripts for COL4A2-AS2 Gene

mRNA/cDNA for COL4A2-AS2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for COL4A2-AS2 Gene

COL4A2 antisense RNA 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COL4A2-AS2 Gene

No ASD Table

Relevant External Links for COL4A2-AS2 Gene

GeneLoc Exon Structure for
COL4A2-AS2
ECgene alternative splicing isoforms for
COL4A2-AS2

Expression for COL4A2-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COL4A2-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for COL4A2-AS2 Gene

This gene is overexpressed in Artery - Tibial (x4.1).

Protein differential expression in normal tissues from HIPED for COL4A2-AS2 Gene

This gene is overexpressed in Liver, secretome (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for COL4A2-AS2 Gene



Protein tissue co-expression partners for COL4A2-AS2 Gene

SOURCE GeneReport for Unigene cluster for COL4A2-AS2 Gene:

Hs.640035
genes like me logo Genes that share expression patterns with COL4A2-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL4A2-AS2 Gene

Orthologs for COL4A2-AS2 Gene

Evolution for COL4A2-AS2 Gene

ENSEMBL:
Gene Tree for COL4A2-AS2 (if available)
TreeFam:
Gene Tree for COL4A2-AS2 (if available)

No data available for Orthologs for COL4A2-AS2 Gene

Paralogs for COL4A2-AS2 Gene

No data available for Paralogs for COL4A2-AS2 Gene

Variants for COL4A2-AS2 Gene

Sequence variations from dbSNP and Humsavar for COL4A2-AS2 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs112262533 likely-benign, Porencephaly 110,462,172(-) C/A/T intron_variant
rs202017641 likely-benign, Porencephaly 110,457,378(-) G/A/T intron_variant
rs766981913 uncertain-significance, Porencephaly 110,462,346(-) G/A intron_variant
rs7990214 benign, Porencephaly 110,458,826(-) G/A intron_variant
rs7990383 benign, Porencephaly 110,458,888(-) G/A intron_variant

Additional Variant Information for COL4A2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL4A2-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COL4A2-AS2 Gene

Disorders for COL4A2-AS2 Gene

Additional Disease Information for COL4A2-AS2

No disorders were found for COL4A2-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL4A2-AS2 Gene

Publications for COL4A2-AS2 Gene

No publications were found for COL4A2-AS2 Gene.

Products for COL4A2-AS2 Gene

Sources for COL4A2-AS2 Gene

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