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Aliases for COL4A2-AS1 Gene

Subcategory (RNA class) for COL4A2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for COL4A2-AS1 Gene

  • COL4A2 Antisense RNA 1 2 3 5
  • COL4A2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for COL4A2-AS1 Gene

Previous GeneCards Identifiers for COL4A2-AS1 Gene

  • GC00U933961
  • GC13M111155

Summaries for COL4A2-AS1 Gene

GeneCards Summary for COL4A2-AS1 Gene

COL4A2-AS1 (COL4A2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for COL4A2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL4A2-AS1 Gene

Genomics for COL4A2-AS1 Gene

GeneHancer (GH) Regulatory Elements for COL4A2-AS1 Gene

Promoters and enhancers for COL4A2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I110505 Enhancer 1.4 Ensembl ENCODE dbSUPER 550.8 -0.2 -222 5.5 FOXA2 PKNOX1 ATF1 FEZF1 YY1 TCF12 ZNF766 GATA2 ARID2 RXRA COL4A2-AS1 COL4A2-AS2 COL4A2 RAB20 NAXD GC13P110514
GH13I110502 Enhancer 0.9 ENCODE dbSUPER 0.8 +4.5 4454 2 PKNOX1 NFRKB MAX EBF1 RARA TCF12 ZNF316 VEZF1 CBFA2T2 NFE2 RAB20 COL4A2-AS1 COL4A2-AS2 COL4A2
GH13I110511 Enhancer 0.6 dbSUPER 0.8 -3.6 -3633 1 CTCF SOX6 TEAD4 TAL1 CBFA2T3 RAD21 ZNF592 TCF12 NCOR1 ZNF184 RAB20 COL4A2-AS2 COL4A2 COL4A2-AS1 GC13P110514
GH13I110470 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +36.4 36388 1.8 PKNOX1 ATF1 IRF4 TCF12 ATF7 RUNX3 RXRA JUNB REST MBD2 RAB20 ANKRD10 ING1 COL4A2-AS2 COL4A2-AS1 COL4A2
GH13I110463 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +43.8 43819 0.9 HDGF NR2F1 EBF1 GLIS2 TARDBP IKZF1 NBN ATF7 RUNX3 IKZF2 COL4A2-AS2 RAB20 ANKRD10 ING1 COL4A2-AS1 COL4A2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around COL4A2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COL4A2-AS1 Gene

Genomic Locations for COL4A2-AS1 Gene
chr13:110,502,575-110,508,179
(GRCh38/hg38)
Size:
5,605 bases
Orientation:
Minus strand
chr13:111,154,922-111,160,526
(GRCh37/hg19)

Genomic View for COL4A2-AS1 Gene

Genes around COL4A2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL4A2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL4A2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL4A2-AS1 Gene

Proteins for COL4A2-AS1 Gene

Post-translational modifications for COL4A2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL4A2-AS1 Gene

Domains & Families for COL4A2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL4A2-AS1 Gene

Function for COL4A2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL4A2-AS1 Gene

Localization for COL4A2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COL4A2-AS1 Gene

Pathways & Interactions for COL4A2-AS1 Gene

SuperPathways for COL4A2-AS1 Gene

No Data Available

Interacting Proteins for COL4A2-AS1 Gene

Gene Ontology (GO) - Biological Process for COL4A2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL4A2-AS1 Gene

Drugs & Compounds for COL4A2-AS1 Gene

No Compound Related Data Available

Transcripts for COL4A2-AS1 Gene

mRNA/cDNA for COL4A2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COL4A2-AS1 Gene

No ASD Table

Relevant External Links for COL4A2-AS1 Gene

GeneLoc Exon Structure for
COL4A2-AS1
ECgene alternative splicing isoforms for
COL4A2-AS1

Expression for COL4A2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COL4A2-AS1 Gene

genes like me logo Genes that share expression patterns with COL4A2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL4A2-AS1 Gene

Orthologs for COL4A2-AS1 Gene

Evolution for COL4A2-AS1 Gene

ENSEMBL:
Gene Tree for COL4A2-AS1 (if available)
TreeFam:
Gene Tree for COL4A2-AS1 (if available)

No data available for Orthologs for COL4A2-AS1 Gene

Paralogs for COL4A2-AS1 Gene

No data available for Paralogs for COL4A2-AS1 Gene

Variants for COL4A2-AS1 Gene

Sequence variations from dbSNP and Humsavar for COL4A2-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs182278784 likely-benign, Porencephaly 110,506,573(-) G/A/C intron_variant
rs186888528 likely-benign, Porencephaly 110,506,590(-) G/A intron_variant
rs191708663 likely-benign, Porencephaly 110,503,964(-) T/C/G intron_variant
rs201426733 likely-benign, Porencephaly 110,506,468(-) G/A intron_variant
rs201956616 likely-benign, Porencephaly 110,508,077(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for COL4A2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2748034 CNV deletion 23290073
nsv1038914 CNV loss 25217958
nsv1044234 CNV gain 25217958
nsv1046291 CNV loss 25217958
nsv1046423 CNV gain 25217958
nsv509516 CNV insertion 20534489
nsv563121 CNV loss 21841781
nsv832720 CNV loss 17160897

Additional Variant Information for COL4A2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL4A2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COL4A2-AS1 Gene

Disorders for COL4A2-AS1 Gene

Additional Disease Information for COL4A2-AS1

No disorders were found for COL4A2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL4A2-AS1 Gene

Publications for COL4A2-AS1 Gene

No publications were found for COL4A2-AS1 Gene.

Products for COL4A2-AS1 Gene

Sources for COL4A2-AS1 Gene

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