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Aliases for COL18A1-AS2 Gene

Subcategory (RNA class) for COL18A1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for COL18A1-AS2 Gene

  • COL18A1 Antisense RNA 2 2 3 5
  • COL18A1 Antisense RNA 2 (Non-Protein Coding) 2 3

External Ids for COL18A1-AS2 Gene

Previous GeneCards Identifiers for COL18A1-AS2 Gene

  • GC00U933234
  • GC21M046828
  • GC21M046925

Summaries for COL18A1-AS2 Gene

GeneCards Summary for COL18A1-AS2 Gene

COL18A1-AS2 (COL18A1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with COL18A1-AS2 include Uterine Corpus Cancer.

Additional gene information for COL18A1-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL18A1-AS2 Gene

Genomics for COL18A1-AS2 Gene

GeneHancer (GH) Regulatory Elements for COL18A1-AS2 Gene

Promoters and enhancers for COL18A1-AS2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around COL18A1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COL18A1-AS2 Gene

Genomic Locations for COL18A1-AS2 Gene
chr21:45,407,386-45,410,065
(GRCh38/hg38)
Size:
2,680 bases
Orientation:
Minus strand
chr21:46,827,301-46,829,980
(GRCh37/hg19)
Size:
2,680 bases
Orientation:
Minus strand

Genomic View for COL18A1-AS2 Gene

Genes around COL18A1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL18A1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL18A1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL18A1-AS2 Gene

Proteins for COL18A1-AS2 Gene

Post-translational modifications for COL18A1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL18A1-AS2 Gene

Domains & Families for COL18A1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL18A1-AS2 Gene

Function for COL18A1-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL18A1-AS2 Gene

Localization for COL18A1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COL18A1-AS2 Gene

Pathways & Interactions for COL18A1-AS2 Gene

PathCards logo

SuperPathways for COL18A1-AS2 Gene

No Data Available

Interacting Proteins for COL18A1-AS2 Gene

Gene Ontology (GO) - Biological Process for COL18A1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL18A1-AS2 Gene

Drugs & Compounds for COL18A1-AS2 Gene

No Compound Related Data Available

Transcripts for COL18A1-AS2 Gene

mRNA/cDNA for COL18A1-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for COL18A1-AS2 Gene

COL18A1 antisense RNA 2:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for COL18A1-AS2 Gene

No ASD Table

Relevant External Links for COL18A1-AS2 Gene

GeneLoc Exon Structure for
COL18A1-AS2
ECgene alternative splicing isoforms for
COL18A1-AS2

Expression for COL18A1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COL18A1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for COL18A1-AS2 Gene

This gene is overexpressed in Liver (x5.6) and Brain - Cortex (x4.5).

SOURCE GeneReport for Unigene cluster for COL18A1-AS2 Gene:

Hs.589901
genes like me logo Genes that share expression patterns with COL18A1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL18A1-AS2 Gene

Orthologs for COL18A1-AS2 Gene

Evolution for COL18A1-AS2 Gene

ENSEMBL:
Gene Tree for COL18A1-AS2 (if available)
TreeFam:
Gene Tree for COL18A1-AS2 (if available)

No data available for Orthologs for COL18A1-AS2 Gene

Paralogs for COL18A1-AS2 Gene

No data available for Paralogs for COL18A1-AS2 Gene

Variants for COL18A1-AS2 Gene

Sequence variations from dbSNP and Humsavar for COL18A1-AS2 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000318093 -- 45,410,042(-) A/C non_coding_transcript_variant
rs1000356842 -- 45,411,142(-) G/A/C upstream_transcript_variant
rs1002027702 -- 45,411,585(-) G/A upstream_transcript_variant
rs1002333899 -- 45,408,824(-) C/T intron_variant
rs1002893187 -- 45,409,266(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for COL18A1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv4436n100 CNV gain 25217958
dgv537n27 CNV gain 19166990
dgv7899n54 CNV gain 21841781
dgv7900n54 CNV gain 21841781
esv2762114 CNV gain 21179565
nsv1057607 CNV gain 25217958
nsv470909 CNV gain 18288195
nsv520123 CNV gain 19592680
nsv953653 CNV deletion 24416366

Additional Variant Information for COL18A1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL18A1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COL18A1-AS2 Gene

Disorders for COL18A1-AS2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for COL18A1-AS2 Gene - From: DISEASES

Disorder Aliases PubMed IDs
uterine corpus cancer
  • corpus uteri cancer
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for COL18A1-AS2

genes like me logo Genes that share disorders with COL18A1-AS2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for COL18A1-AS2 Gene

Publications for COL18A1-AS2 Gene

No publications were found for COL18A1-AS2 Gene.

No data available for External Links for COL18A1-AS2 Gene

Products for COL18A1-AS2 Gene

Sources for COL18A1-AS2 Gene

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