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Aliases for COL18A1-AS2 Gene

Subcategory (RNA class) for COL18A1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for COL18A1-AS2 Gene

  • COL18A1 Antisense RNA 2 2 3 5
  • COL18A1 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for COL18A1-AS2 Gene

Previous GeneCards Identifiers for COL18A1-AS2 Gene

  • GC00U933234
  • GC21M046828
  • GC21M046925

Summaries for COL18A1-AS2 Gene

GeneCards Summary for COL18A1-AS2 Gene

COL18A1-AS2 (COL18A1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for COL18A1-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL18A1-AS2 Gene

Genomics for COL18A1-AS2 Gene

GeneHancer (GH) Regulatory Elements for COL18A1-AS2 Gene

Promoters and enhancers for COL18A1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I045316 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +89.4 89409 7.5 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 SLC30A9 GLIS2 COL18A1 ENSG00000228355 MTCO1P3 ENSG00000215447 POFUT2 COL18A1-AS2 LINC00315 LINC00205 ENSG00000184441 LOC105372838
GH21I045347 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +61.0 60983 3 PKNOX1 ZSCAN4 ZNF48 ZNF121 ZNF766 GLIS2 ZNF366 ZNF416 EGR2 ZEB2 LOC105372839 ENSG00000228137 COL18A1 MCM3AP POFUT2 MCM3AP-AS1 UBE2G2 COL6A1 MTCO1P3 ENSG00000228355
GH21I045324 Enhancer 0.7 ENCODE dbSUPER 12.3 +85.1 85053 0.9 ZFHX2 SCRT2 RAD21 EGR2 ENSG00000228355 MTCO1P3 COL18A1 COL18A1-AS2 ENSG00000184441 LOC105372838 LOC105372837
GH21I045372 Enhancer 0.6 ENCODE 12.5 +36.8 36811 1 CTCF SUZ12 MAFG ZNF280A CBX5 NFE2 FOS TRIM24 PRDM10 TRIM28 COL18A1 COL18A1-AS2 MTCO1P3 LOC105372839 GC21M045662
GH21I045091 Enhancer 0.7 Ensembl dbSUPER 10.3 +318.1 318064 0.8 ZFHX2 ZIC2 EGR2 ZBTB17 COL18A1 COL18A1-AS2 LINC00315 TSPEAR-AS1 LOC105372835 SSR4P1 ADARB1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around COL18A1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COL18A1-AS2 Gene

Genomic Locations for COL18A1-AS2 Gene
chr21:45,407,386-45,410,065
(GRCh38/hg38)
Size:
2,680 bases
Orientation:
Minus strand
chr21:46,827,301-46,829,980
(GRCh37/hg19)

Genomic View for COL18A1-AS2 Gene

Genes around COL18A1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL18A1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL18A1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL18A1-AS2 Gene

Proteins for COL18A1-AS2 Gene

Post-translational modifications for COL18A1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL18A1-AS2 Gene

Domains & Families for COL18A1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL18A1-AS2 Gene

Function for COL18A1-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL18A1-AS2 Gene

Localization for COL18A1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COL18A1-AS2 Gene

Pathways & Interactions for COL18A1-AS2 Gene

SuperPathways for COL18A1-AS2 Gene

No Data Available

Interacting Proteins for COL18A1-AS2 Gene

Gene Ontology (GO) - Biological Process for COL18A1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL18A1-AS2 Gene

Drugs & Compounds for COL18A1-AS2 Gene

No Compound Related Data Available

Transcripts for COL18A1-AS2 Gene

mRNA/cDNA for COL18A1-AS2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for COL18A1-AS2 Gene

COL18A1 antisense RNA 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COL18A1-AS2 Gene

No ASD Table

Relevant External Links for COL18A1-AS2 Gene

GeneLoc Exon Structure for
COL18A1-AS2
ECgene alternative splicing isoforms for
COL18A1-AS2

Expression for COL18A1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COL18A1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for COL18A1-AS2 Gene

This gene is overexpressed in Liver (x5.6) and Brain - Cortex (x4.5).

SOURCE GeneReport for Unigene cluster for COL18A1-AS2 Gene:

Hs.589901
genes like me logo Genes that share expression patterns with COL18A1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL18A1-AS2 Gene

Orthologs for COL18A1-AS2 Gene

Evolution for COL18A1-AS2 Gene

ENSEMBL:
Gene Tree for COL18A1-AS2 (if available)
TreeFam:
Gene Tree for COL18A1-AS2 (if available)

No data available for Orthologs for COL18A1-AS2 Gene

Paralogs for COL18A1-AS2 Gene

No data available for Paralogs for COL18A1-AS2 Gene

Variants for COL18A1-AS2 Gene

Sequence variations from dbSNP and Humsavar for COL18A1-AS2 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000318093 -- 45,410,042(-) A/C non_coding_transcript_variant
rs1000356842 -- 45,411,142(-) G/A upstream_transcript_variant
rs1002027702 -- 45,411,585(-) G/A upstream_transcript_variant
rs1002333899 -- 45,408,824(-) C/T intron_variant
rs1002893187 -- 45,409,266(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for COL18A1-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv953653 CNV deletion 24416366
nsv520123 CNV gain 19592680
nsv470909 CNV gain 18288195
nsv1057607 CNV gain 25217958
esv2762114 CNV gain 21179565
dgv7900n54 CNV gain 21841781
dgv7899n54 CNV gain 21841781
dgv537n27 CNV gain 19166990
dgv4436n100 CNV gain 25217958

Additional Variant Information for COL18A1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL18A1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COL18A1-AS2 Gene

Disorders for COL18A1-AS2 Gene

Additional Disease Information for COL18A1-AS2

No disorders were found for COL18A1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL18A1-AS2 Gene

Publications for COL18A1-AS2 Gene

No publications were found for COL18A1-AS2 Gene.

Products for COL18A1-AS2 Gene

Sources for COL18A1-AS2 Gene

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