Free for academic non-profit institutions. Other users need a Commercial license

Aliases for COL18A1-AS1 Gene

Subcategory (RNA class) for COL18A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for COL18A1-AS1 Gene

  • COL18A1 Antisense RNA 1 2 3 5
  • COL18A1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 21 Open Reading Frame 123 2
  • Non-Protein Coding RNA 175 2
  • NCRNA00175 3
  • C21orf123 3
  • PRED80 3

External Ids for COL18A1-AS1 Gene

Previous HGNC Symbols for COL18A1-AS1 Gene

  • C21orf123
  • NCRNA00175

Previous GeneCards Identifiers for COL18A1-AS1 Gene

  • GC21M046840
  • GC21M046942

Summaries for COL18A1-AS1 Gene

GeneCards Summary for COL18A1-AS1 Gene

COL18A1-AS1 (COL18A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for COL18A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL18A1-AS1 Gene

Genomics for COL18A1-AS1 Gene

GeneHancer (GH) Regulatory Elements for COL18A1-AS1 Gene

Promoters and enhancers for COL18A1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J045423 Enhancer 0.9 ENCODE dbSUPER 650.7 +0.7 661 2.7 SOX13 TFAP4 SAP130 MLX ARID4B THRB RARA ETS1 ZNF205 GLIS2 COL18A1-AS1 ENSG00000228355 MTCO1P3 COL18A1 PTTG1IP FTCD GC21M045799 COL18A1-AS2
GH21J046078 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 7 -656.4 -656434 6.2 ZNF146 CLOCK SUZ12 ZSCAN4 MAX PAX8 ZNF48 ZIC2 POLR2A NFATC1 ENSG00000227438 COL6A2 COL6A1 MCM3AP LOC105372842 ENSG00000228137 POFUT2 PSMA6P3 COL18A1-AS1 SPATC1L
GH21J045426 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.7 -2.6 -2578 2 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZNF207 FOS ENSG00000228355 MTCO1P3 COL18A1 PTTG1IP COL18A1-AS1 GC21M045799
GH21J045421 Enhancer 1 ENCODE dbSUPER 0.7 +3.8 3784 2.4 HDGF ATF1 ZNF473 NFIB HSF1 ZNF114 ZNF662 ZNF592 ZNF217 NFIC MCM3AP MCM3AP-AS1 ENSG00000228137 UBE2G2 COL6A1 ENSG00000227438 COL6A2 LINC01424 LOC105372842 POFUT2
GH21J045429 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -6.9 -6854 5.2 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 ETS1 TCF12 FOS SP5 GC21M045799 COL18A1 ENSG00000228355 MTCO1P3 PTTG1IP COL18A1-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around COL18A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COL18A1-AS1 Gene

Genomic Locations for COL18A1-AS1 Gene
chr21:45,419,716-45,425,070
(GRCh38/hg38)
Size:
5,355 bases
Orientation:
Minus strand
chr21:46,839,631-46,844,985
(GRCh37/hg19)

Genomic View for COL18A1-AS1 Gene

Genes around COL18A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL18A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL18A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL18A1-AS1 Gene

Proteins for COL18A1-AS1 Gene

Post-translational modifications for COL18A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL18A1-AS1 Gene

Domains & Families for COL18A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL18A1-AS1 Gene

Function for COL18A1-AS1 Gene

Phenotypes From GWAS Catalog for COL18A1-AS1 Gene

genes like me logo Genes that share phenotypes with COL18A1-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for COL18A1-AS1

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL18A1-AS1 Gene

Localization for COL18A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COL18A1-AS1 Gene

Pathways & Interactions for COL18A1-AS1 Gene

SuperPathways for COL18A1-AS1 Gene

No Data Available

Interacting Proteins for COL18A1-AS1 Gene

Gene Ontology (GO) - Biological Process for COL18A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL18A1-AS1 Gene

Drugs & Compounds for COL18A1-AS1 Gene

No Compound Related Data Available

Transcripts for COL18A1-AS1 Gene

mRNA/cDNA for COL18A1-AS1 Gene

(2) Selected AceView cDNA sequences:
(5) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for COL18A1-AS1 Gene

COL18A1 antisense RNA 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for COL18A1-AS1

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COL18A1-AS1 Gene

No ASD Table

Relevant External Links for COL18A1-AS1 Gene

GeneLoc Exon Structure for
COL18A1-AS1
ECgene alternative splicing isoforms for
COL18A1-AS1

Expression for COL18A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COL18A1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for COL18A1-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x13.2) and Pituitary (x4.5).

SOURCE GeneReport for Unigene cluster for COL18A1-AS1 Gene:

Hs.517353
genes like me logo Genes that share expression patterns with COL18A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL18A1-AS1 Gene

Orthologs for COL18A1-AS1 Gene

Evolution for COL18A1-AS1 Gene

ENSEMBL:
Gene Tree for COL18A1-AS1 (if available)
TreeFam:
Gene Tree for COL18A1-AS1 (if available)

No data available for Orthologs for COL18A1-AS1 Gene

Paralogs for COL18A1-AS1 Gene

No data available for Paralogs for COL18A1-AS1 Gene

Variants for COL18A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for COL18A1-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000722156 -- 45,426,254(-) G/A upstream_transcript_variant
rs1001064821 -- 45,422,712(-) C/A/T intron_variant
rs1001157086 -- 45,424,047(-) C/T intron_variant, non_coding_transcript_variant
rs1001322735 -- 45,419,525(-) G/T downstream_transcript_variant
rs1001574737 -- 45,425,087(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for COL18A1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4436n100 CNV gain 25217958
dgv537n27 CNV gain 19166990
dgv7899n54 CNV gain 21841781
dgv7900n54 CNV gain 21841781
esv2762114 CNV gain 21179565
nsv1057607 CNV gain 25217958
nsv470909 CNV gain 18288195
nsv516407 CNV loss 19592680
nsv834111 CNV loss 17160897
nsv953653 CNV deletion 24416366

Additional Variant Information for COL18A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL18A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COL18A1-AS1 Gene

Disorders for COL18A1-AS1 Gene

Additional Disease Information for COL18A1-AS1

No disorders were found for COL18A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL18A1-AS1 Gene

Publications for COL18A1-AS1 Gene

  1. Multiple loci influencing hippocampal degeneration identified by genome scan. (PMID: 22745009) Melville SA … Alzheimer's Disease Neuroimaging Initiative (Annals of neurology 2012) 3 58
  2. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz HJ … Yaspo ML (Nucleic acids research 2010) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for COL18A1-AS1 Gene

Sources for COL18A1-AS1 Gene

Content
Loading form....