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Aliases for CNTNAP3C Gene

Aliases for CNTNAP3C Gene

  • Contactin Associated Protein Like 3C 2 3
  • Contactin Associated Protein-Like 3-Like 3
  • Contactin-Associated Protein-Like 3 3
  • BX088645.1 5

External Ids for CNTNAP3C Gene

Summaries for CNTNAP3C Gene

GeneCards Summary for CNTNAP3C Gene

CNTNAP3C (Contactin Associated Protein Like 3C) is a Protein Coding gene. An important paralog of this gene is CNTNAP3.

Additional gene information for CNTNAP3C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNTNAP3C Gene

Genomics for CNTNAP3C Gene

GeneHancer (GH) Regulatory Elements for CNTNAP3C Gene

Promoters and enhancers for CNTNAP3C Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J061330 Promoter 0.5 Ensembl 650.7 +0.6 609 2.4 CNTNAP3C LOC100420438
GH09J061333 Enhancer 0.2 Ensembl 0.7 +2.5 2509 0.2 CNTNAP3C LOC100420438
GH09J061386 Enhancer 0.2 Ensembl 0.2 +55.8 55809 0.4 LOC100420438 RN7SL462P CNTNAP3C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CNTNAP3C on UCSC Golden Path with GeneCards custom track

Genomic Locations for CNTNAP3C Gene

Genomic Locations for CNTNAP3C Gene
130,751 bases
Plus strand

Genomic View for CNTNAP3C Gene

Genes around CNTNAP3C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNTNAP3C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNTNAP3C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNTNAP3C Gene

Proteins for CNTNAP3C Gene

  • Protein details for CNTNAP3C Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein
    Protein Accession:

    Protein attributes for CNTNAP3C Gene

    492 amino acids
    Molecular mass:
    54649 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CNTNAP3C Gene

Post-translational modifications for CNTNAP3C Gene

No Post-translational modifications

Other Protein References for CNTNAP3C Gene

No data available for DME Specific Peptides for CNTNAP3C Gene

Domains & Families for CNTNAP3C Gene

Protein Domains for CNTNAP3C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CNTNAP3C: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CNTNAP3C Gene

Function for CNTNAP3C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CNTNAP3C Gene

Localization for CNTNAP3C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CNTNAP3C Gene

Pathways & Interactions for CNTNAP3C Gene

SuperPathways for CNTNAP3C Gene

No Data Available

Interacting Proteins for CNTNAP3C Gene

Gene Ontology (GO) - Biological Process for CNTNAP3C Gene


No data available for Pathways by source and SIGNOR curated interactions for CNTNAP3C Gene

Drugs & Compounds for CNTNAP3C Gene

No Compound Related Data Available

Transcripts for CNTNAP3C Gene


(4) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CNTNAP3C Gene

No ASD Table

Relevant External Links for CNTNAP3C Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CNTNAP3C Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CNTNAP3C Gene

Orthologs for CNTNAP3C Gene

Evolution for CNTNAP3C Gene

Gene Tree for CNTNAP3C (if available)
Gene Tree for CNTNAP3C (if available)

No data available for Orthologs for CNTNAP3C Gene

Paralogs for CNTNAP3C Gene

genes like me logo Genes that share paralogs with CNTNAP3C: view

Variants for CNTNAP3C Gene

Sequence variations from dbSNP and Humsavar for CNTNAP3C Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000104938 -- 61,406,631(+) C/G intron_variant
rs1000140106 -- 61,344,373(+) C/A intron_variant
rs1000184691 -- 61,375,628(+) G/A intron_variant
rs1000226369 -- 61,370,475(+) A/G intron_variant
rs1000342225 -- 61,370,672(+) CCCCC/CCCCCC intron_variant

Additional Variant Information for CNTNAP3C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CNTNAP3C Gene

Disorders for CNTNAP3C Gene

No disorders were found for CNTNAP3C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CNTNAP3C Gene

Publications for CNTNAP3C Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for CNTNAP3C Gene

Sources for CNTNAP3C Gene

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