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Aliases for CNNM3-DT Gene

Subcategory (RNA class) for CNNM3-DT Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CNNM3-DT Gene

  • CNNM3 Divergent Transcript 2 3 5

External Ids for CNNM3-DT Gene

Summaries for CNNM3-DT Gene

GeneCards Summary for CNNM3-DT Gene

CNNM3-DT (CNNM3 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CNNM3-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNNM3-DT Gene

Genomics for CNNM3-DT Gene

GeneHancer (GH) Regulatory Elements for CNNM3-DT Gene

Promoters and enhancers for CNNM3-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I096810 Enhancer 0.8 ENCODE 0.8 +2.6 2629 2.4 HDAC1 ELF3 PKNOX1 DMAP1 RAD21 THRB ZSCAN9 ZBTB40 TCF12 GATA2 PIR40637 LMAN2L CNNM4 CNNM3-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CNNM3-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CNNM3-DT Gene

Genomic Locations for CNNM3-DT Gene
chr2:96,812,239-96,814,072
(GRCh38/hg38)
Size:
1,834 bases
Orientation:
Minus strand
chr2:97,477,976-97,480,170
(GRCh37/hg19)

Genomic View for CNNM3-DT Gene

Genes around CNNM3-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNNM3-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNNM3-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNNM3-DT Gene

Proteins for CNNM3-DT Gene

Post-translational modifications for CNNM3-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CNNM3-DT Gene

Domains & Families for CNNM3-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CNNM3-DT Gene

Function for CNNM3-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CNNM3-DT Gene

Localization for CNNM3-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CNNM3-DT Gene

Pathways & Interactions for CNNM3-DT Gene

SuperPathways for CNNM3-DT Gene

No Data Available

Interacting Proteins for CNNM3-DT Gene

Gene Ontology (GO) - Biological Process for CNNM3-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CNNM3-DT Gene

Drugs & Compounds for CNNM3-DT Gene

No Compound Related Data Available

Transcripts for CNNM3-DT Gene

mRNA/cDNA for CNNM3-DT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CNNM3-DT Gene

No ASD Table

Relevant External Links for CNNM3-DT Gene

GeneLoc Exon Structure for
CNNM3-DT
ECgene alternative splicing isoforms for
CNNM3-DT

Expression for CNNM3-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CNNM3-DT Gene

Orthologs for CNNM3-DT Gene

Evolution for CNNM3-DT Gene

ENSEMBL:
Gene Tree for CNNM3-DT (if available)
TreeFam:
Gene Tree for CNNM3-DT (if available)

No data available for Orthologs for CNNM3-DT Gene

Paralogs for CNNM3-DT Gene

No data available for Paralogs for CNNM3-DT Gene

Variants for CNNM3-DT Gene

Sequence variations from dbSNP and Humsavar for CNNM3-DT Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs12846 benign, Cone-rod dystrophy amelogenesis imperfecta 96,811,637(-) C/A/T downstream_transcript_variant
rs538676167 uncertain-significance, Cone-rod dystrophy amelogenesis imperfecta 96,811,491(-) C/T downstream_transcript_variant
rs7585552 likely-benign, Cone-rod dystrophy amelogenesis imperfecta 96,811,507(-) T/A downstream_transcript_variant
rs886056483 uncertain-significance, Cone-rod dystrophy amelogenesis imperfecta 96,811,454(-) G/A downstream_transcript_variant
rs886056484 uncertain-significance, Cone-rod dystrophy amelogenesis imperfecta 96,811,771(-) TTGTTGTT/TTGTT downstream_transcript_variant

Additional Variant Information for CNNM3-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CNNM3-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CNNM3-DT Gene

Disorders for CNNM3-DT Gene

No disorders were found for CNNM3-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CNNM3-DT Gene

Publications for CNNM3-DT Gene

  1. Increased expression of long noncoding RNAs LOC100652951 and LOC100506036 in T cells from patients with rheumatoid arthritis facilitates the inflammatory responses. (PMID: 26616293) Lu MC … Lai NS (Immunologic research 2016) 2 3 58

Products for CNNM3-DT Gene

Sources for CNNM3-DT Gene

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