Aliases for CNNM3-DT Gene

Subcategory (RNA class) for CNNM3-DT Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for CNNM3-DT Gene

  • CNNM3 Divergent Transcript 2 3 5
  • NONHSAG028624 94
  • HSALNG0017086 169
  • CNNM3-DT 170

External Ids for CNNM3-DT Gene

Summaries for CNNM3-DT Gene

GeneCards Summary for CNNM3-DT Gene

CNNM3-DT (CNNM3 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CNNM3-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CNNM3-DT Gene

Genomics for CNNM3-DT Gene

GeneHancer (GH) Regulatory Elements for CNNM3-DT Gene

Promoters and enhancers for CNNM3-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J096815 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 -1.9 -1873 6.9 GTF3C2 SP1 CTCF MLX FOXA1 SMARCE1 RBPJ POLR2A NR2F1 NR2F6 CNNM3 CNNM3-DT SNRNP200 KANSL3 STARD7-AS1 NCAPH CIAO1 ANKRD36 SEMA4C LMAN2L
GH02J096811 Enhancer 1 Ensembl ENCODE 0.4 +5.3 5259 3 RBPJ L3MBTL2 TEAD4 ELF3 TFE3 CBFA2T2 SMARCA4 TRIM24 KAT8 ZNF644 piR-47638 LMAN2L CNNM4 CNNM3 CNNM3-DT
GH02J096824 Enhancer 0.8 Ensembl ENCODE 0.4 -7.4 -7449 0.8 HMG20B GATAD2A RXRB SAP130 FOXA2 DPF2 TEAD1 CUX1 FOXA1 BCL6 LMAN2L CNNM4 CNNM3 CNNM3-DT NONHSAG028626.2
GH02J096823 Enhancer 0.3 Ensembl 0.4 -6.7 -6735 0.2 POLR2A CNNM4 LMAN2L CNNM3 CNNM3-DT NONHSAG028626.2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CNNM3-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CNNM3-DT Gene

Genomic Locations for CNNM3-DT Gene
chr2:96,811,825-96,816,566
(GRCh38/hg38)
Size:
4,742 bases
Orientation:
Minus strand
chr2:97,477,976-97,480,170
(GRCh37/hg19)
Size:
2,195 bases
Orientation:
Minus strand

Genomic View for CNNM3-DT Gene

Genes around CNNM3-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNNM3-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNNM3-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNNM3-DT Gene

Proteins for CNNM3-DT Gene

Post-translational modifications for CNNM3-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CNNM3-DT Gene

Domains & Families for CNNM3-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CNNM3-DT Gene

Function for CNNM3-DT Gene

Phenotypes From GWAS Catalog for CNNM3-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CNNM3-DT Gene

Localization for CNNM3-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CNNM3-DT Gene

Pathways & Interactions for CNNM3-DT Gene

PathCards logo

SuperPathways for CNNM3-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for CNNM3-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CNNM3-DT Gene

Drugs & Compounds for CNNM3-DT Gene

No Compound Related Data Available

Transcripts for CNNM3-DT Gene

mRNA/cDNA for CNNM3-DT Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(12) RNACentral transcripts :
(10) LNCipedia transcripts :
(4) LncBook transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CNNM3-DT Gene

No ASD Table

Relevant External Links for CNNM3-DT Gene

GeneLoc Exon Structure for
CNNM3-DT
ECgene alternative splicing isoforms for
CNNM3-DT

Expression for CNNM3-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CNNM3-DT Gene

Orthologs for CNNM3-DT Gene

Evolution for CNNM3-DT Gene

ENSEMBL:
Gene Tree for CNNM3-DT (if available)
TreeFam:
Gene Tree for CNNM3-DT (if available)

No data available for Orthologs for CNNM3-DT Gene

Paralogs for CNNM3-DT Gene

No data available for Paralogs for CNNM3-DT Gene

Variants for CNNM3-DT Gene

Sequence variations from dbSNP and Humsavar for CNNM3-DT Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs886056484 uncertain-significance, Cone-rod dystrophy amelogenesis imperfecta 96,811,771(-) TTGTTGTT/TTGTT downstream_transcript_variant
rs1000127740 -- 96,815,099(-) T/C upstream_transcript_variant
rs1000163648 -- 96,813,816(-) C/A upstream_transcript_variant
rs1000182020 -- 96,815,421(-) A/G upstream_transcript_variant
rs1000262318 -- 96,813,532(-) C/T non_coding_transcript_variant

Additional Variant Information for CNNM3-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CNNM3-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CNNM3-DT Gene

Disorders for CNNM3-DT Gene

Additional Disease Information for CNNM3-DT

No disorders were found for CNNM3-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CNNM3-DT Gene

Publications for CNNM3-DT Gene

  1. Increased expression of long noncoding RNAs LOC100652951 and LOC100506036 in T cells from patients with rheumatoid arthritis facilitates the inflammatory responses. (PMID: 26616293) Lu MC … Lai NS (Immunologic research 2016) 2 3 56

Products for CNNM3-DT Gene

Sources for CNNM3-DT Gene