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Aliases for CLUHP3 Gene

Aliases for CLUHP3 Gene

  • Clustered Mitochondria Homolog Pseudogene 3 2 3 5
  • Clustered Mitochondria (CluA/CLU1) Homolog Pseudogene 3 2 3 4
  • KIAA0664-Like 3 2 3
  • KIAA0664L3 3 4
  • C16orf67 3 4
  • Chromosome 16 Open Reading Frame 67 2
  • Up-Regulated In Lung Cancer 3 3
  • KIAA0664-Like Protein 3 4
  • KIAA0664 Pseudogene 3 2
  • KIAA0664P3 3
  • URLC3 3

External Ids for CLUHP3 Gene

Previous HGNC Symbols for CLUHP3 Gene

  • C16orf67
  • KIAA0664P3
  • KIAA0664L3

Summaries for CLUHP3 Gene

GeneCards Summary for CLUHP3 Gene

CLUHP3 (Clustered Mitochondria Homolog Pseudogene 3) is a Pseudogene.

Additional gene information for CLUHP3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLUHP3 Gene

Genomics for CLUHP3 Gene

GeneHancer (GH) Regulatory Elements for CLUHP3 Gene

Promoters and enhancers for CLUHP3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J031699 Promoter/Enhancer 1.5 Ensembl ENCODE 676 +0.5 473 2.2 HDGF PKNOX1 FOXA2 SMAD1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 CLUHP3 ENSG00000260568 ENSG00000260304 SETD1A ENSG00000260267 ZNF646 RNF40 ENSG00000262766 STX4 ENSG00000276867
GH16J031712 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 24.7 +13.6 13649 3.3 PKNOX1 SMAD1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 ZNF720 CLUHP3 RNF40 LOC647086 STX4 ZNF646 FUS MIR762HG ENSG00000260267 SETD1A
GH16J031456 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.1 -241.8 -241761 4.9 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 ARMC5 ENSG00000260267 PIR46378 GC16M031458 GC16M031449 SETD1A FUS SRCAP ZNF720 ZNF785
GH16J031071 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.1 -627.0 -626950 5 CLOCK MLX ZFP64 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF646 ZNF668 PIR38332 PIR37153 SETD1A SRCAP ZNF785 KAT8 RNF40 FBRS
GH16J031873 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 8.7 +175.7 175696 6.5 HDGF PKNOX1 FOXA2 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF267 PIR46248 ARMC5 CLUHP3 GC16M031894
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CLUHP3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CLUHP3 Gene

Genomic Locations for CLUHP3 Gene
11,397 bases
Plus strand
9,187 bases
Plus strand

Genomic View for CLUHP3 Gene

Genes around CLUHP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLUHP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLUHP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLUHP3 Gene

Proteins for CLUHP3 Gene

  • Protein details for CLUHP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative protein CLUHP3
    Protein Accession:
    Secondary Accessions:
    • Q9BW88

    Protein attributes for CLUHP3 Gene

    147 amino acids
    Molecular mass:
    16687 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CLUHP3 Gene

Post-translational modifications for CLUHP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLUHP3 Gene

Domains & Families for CLUHP3 Gene

Protein Domains for CLUHP3 Gene


Suggested Antigen Peptide Sequences for CLUHP3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CLUHP3: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CLUHP3 Gene

Function for CLUHP3 Gene

Phenotypes From GWAS Catalog for CLUHP3 Gene

genes like me logo Genes that share phenotypes with CLUHP3: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLUHP3 Gene

Localization for CLUHP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLUHP3 Gene

Pathways & Interactions for CLUHP3 Gene

SuperPathways for CLUHP3 Gene

No Data Available

Interacting Proteins for CLUHP3 Gene

Selected Interacting proteins: Q96NS8-CLUP3_HUMAN for CLUHP3 Gene via UniProtKB

Gene Ontology (GO) - Biological Process for CLUHP3 Gene


No data available for Pathways by source and SIGNOR curated interactions for CLUHP3 Gene

Drugs & Compounds for CLUHP3 Gene

No Compound Related Data Available

Transcripts for CLUHP3 Gene

mRNA/cDNA for CLUHP3 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CLUHP3 Gene

Clustered mitochondria (cluA/CLU1) homolog pseudogene 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CLUHP3 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10
SP1: -
SP3: - -
SP4: -
SP5: -
SP6: - -
SP8: - -

Relevant External Links for CLUHP3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CLUHP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLUHP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of CLUHP3 Gene:


SOURCE GeneReport for Unigene cluster for CLUHP3 Gene:

genes like me logo Genes that share expression patterns with CLUHP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLUHP3 Gene

Orthologs for CLUHP3 Gene

Evolution for CLUHP3 Gene

Gene Tree for CLUHP3 (if available)
Gene Tree for CLUHP3 (if available)

No data available for Orthologs for CLUHP3 Gene

Paralogs for CLUHP3 Gene

No data available for Paralogs for CLUHP3 Gene

Variants for CLUHP3 Gene

Sequence variations from dbSNP and Humsavar for CLUHP3 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000216673 -- 31,703,853(+) A/G intron_variant
rs1000314989 -- 31,704,551(+) A/C intron_variant
rs1000610233 -- 31,705,236(+) G/T intron_variant
rs1001001381 -- 31,698,850(+) T/C upstream_transcript_variant
rs1001033630 -- 31,706,100(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CLUHP3 Gene

Variant ID Type Subtype PubMed ID
esv2658959 CNV deletion 23128226
esv2714195 CNV deletion 23290073
esv3570465 CNV gain 25503493
nsv1057598 CNV gain 25217958
nsv833195 CNV loss 17160897
nsv953806 CNV deletion 24416366

Additional Variant Information for CLUHP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLUHP3 Gene

Disorders for CLUHP3 Gene

Additional Disease Information for CLUHP3

No disorders were found for CLUHP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLUHP3 Gene

Publications for CLUHP3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4 58
  5. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for CLUHP3 Gene

Sources for CLUHP3 Gene

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