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Aliases for CLSTN2-AS1 Gene

Subcategory (RNA class) for CLSTN2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CLSTN2-AS1 Gene

  • CLSTN2 Antisense RNA 1 2 3 5

External Ids for CLSTN2-AS1 Gene

Previous GeneCards Identifiers for CLSTN2-AS1 Gene

  • GC03M140225

Summaries for CLSTN2-AS1 Gene

GeneCards Summary for CLSTN2-AS1 Gene

CLSTN2-AS1 (CLSTN2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CLSTN2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLSTN2-AS1 Gene

Genomics for CLSTN2-AS1 Gene

GeneHancer (GH) Regulatory Elements for CLSTN2-AS1 Gene

Promoters and enhancers for CLSTN2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I140509 Enhancer 0.2 ENCODE 550.8 -1.0 -985 0.2 CLSTN2-AS1 GC03P140509 ENSG00000249290 GC03P140571 CLSTN2
GH03I140466 Enhancer 1.1 FANTOM5 Ensembl ENCODE 10.7 +41.4 41373 1.5 ZBTB21 JUN BACH1 FOSL1 ZNF366 NFE2 FOS TCF7L2 ZNF639 L3MBTL2 CLSTN2-AS1 ENSG00000251058 LOC105374132 CLSTN2
GH03I140527 Enhancer 0.5 ENCODE 11.8 -20.7 -20702 3.5 SREBF1 CTBP1 MAZ HLF DPF2 MNT FOS CLSTN2-AS1 GC03P140509 GC03P140571 CLSTN2
GH03I140719 Enhancer 0.3 ENCODE 5.9 -211.3 -211255 1.5 NR2F2 TRIM42 CLSTN2-AS1 GC03P140715 ENSG00000261826
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CLSTN2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CLSTN2-AS1 Gene

Genomic Locations for CLSTN2-AS1 Gene
chr3:140,505,611-140,508,789
(GRCh38/hg38)
Size:
3,179 bases
Orientation:
Minus strand
chr3:140,224,453-140,227,631
(GRCh37/hg19)

Genomic View for CLSTN2-AS1 Gene

Genes around CLSTN2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLSTN2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLSTN2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLSTN2-AS1 Gene

Proteins for CLSTN2-AS1 Gene

Post-translational modifications for CLSTN2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLSTN2-AS1 Gene

Domains & Families for CLSTN2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLSTN2-AS1 Gene

Function for CLSTN2-AS1 Gene

Phenotypes From GWAS Catalog for CLSTN2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLSTN2-AS1 Gene

Localization for CLSTN2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLSTN2-AS1 Gene

Pathways & Interactions for CLSTN2-AS1 Gene

SuperPathways for CLSTN2-AS1 Gene

No Data Available

Interacting Proteins for CLSTN2-AS1 Gene

Gene Ontology (GO) - Biological Process for CLSTN2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLSTN2-AS1 Gene

Drugs & Compounds for CLSTN2-AS1 Gene

No Compound Related Data Available

Transcripts for CLSTN2-AS1 Gene

mRNA/cDNA for CLSTN2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLSTN2-AS1 Gene

No ASD Table

Relevant External Links for CLSTN2-AS1 Gene

GeneLoc Exon Structure for
CLSTN2-AS1
ECgene alternative splicing isoforms for
CLSTN2-AS1

Expression for CLSTN2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLSTN2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CLSTN2-AS1 Gene

This gene is overexpressed in Testis (x16.0) and Kidney - Cortex (x5.0).
genes like me logo Genes that share expression patterns with CLSTN2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLSTN2-AS1 Gene

Orthologs for CLSTN2-AS1 Gene

Evolution for CLSTN2-AS1 Gene

ENSEMBL:
Gene Tree for CLSTN2-AS1 (if available)
TreeFam:
Gene Tree for CLSTN2-AS1 (if available)

No data available for Orthologs for CLSTN2-AS1 Gene

Paralogs for CLSTN2-AS1 Gene

No data available for Paralogs for CLSTN2-AS1 Gene

Variants for CLSTN2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CLSTN2-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1001557234 -- 140,505,186(-) A/T downstream_transcript_variant
rs1001903271 -- 140,505,488(-) C/T downstream_transcript_variant
rs1003068288 -- 140,508,801(-) T/C upstream_transcript_variant
rs1003340865 -- 140,508,469(-) T/G non_coding_transcript_variant
rs1004983911 -- 140,505,200(-) T/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CLSTN2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759181 CNV gain+loss 17122850
esv34489 CNV gain 17911159
esv3597954 CNV gain 21293372
esv3597960 CNV gain 21293372
nsv527831 CNV gain 19592680
nsv591863 CNV gain 21841781

Additional Variant Information for CLSTN2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLSTN2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLSTN2-AS1 Gene

Disorders for CLSTN2-AS1 Gene

Additional Disease Information for CLSTN2-AS1

No disorders were found for CLSTN2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLSTN2-AS1 Gene

Publications for CLSTN2-AS1 Gene

No publications were found for CLSTN2-AS1 Gene.

Products for CLSTN2-AS1 Gene

Sources for CLSTN2-AS1 Gene

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