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Aliases for CLNS1AP1 Gene

Aliases for CLNS1AP1 Gene

  • Chloride Nucleotide-Sensitive Channel 1A Pseudogene 1 2 3 5
  • Chloride Channel, Nucleotide-Sensitive, 1A Pseudogene 1 2 3
  • Chloride Channel, Nucleotide-Sensitive, 1B 2 3
  • CLNS1B 3
  • ICln 3

External Ids for CLNS1AP1 Gene

Previous HGNC Symbols for CLNS1AP1 Gene

  • CLNS1B

Previous GeneCards Identifiers for CLNS1AP1 Gene

  • GC06M054350

Summaries for CLNS1AP1 Gene

GeneCards Summary for CLNS1AP1 Gene

CLNS1AP1 (Chloride Nucleotide-Sensitive Channel 1A Pseudogene 1) is a Pseudogene.

Gene Wiki entry for CLNS1AP1 Gene

Additional gene information for CLNS1AP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLNS1AP1 Gene

Genomics for CLNS1AP1 Gene

GeneHancer (GH) Regulatory Elements for CLNS1AP1 Gene

Promoters and enhancers for CLNS1AP1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J054490 Enhancer 0.7 Ensembl ENCODE 0.4 -6.3 -6310 3.5 JUND FOSL2 FOS EP300 MAFK ENSG00000261116 CLNS1AP1 GC06P054501
GH06J054419 Enhancer 0.8 Ensembl ENCODE 0.2 +65.8 65790 1.5 ZBTB21 JUN MAX CEBPB EP300 ZNF507 JUND STAT3 FOS FOSL2 GC06P054387 CLNS1AP1
GH06J054431 Enhancer 0.4 ENCODE 0.2 +54.3 54314 0.9 RUNX3 SPI1 ENSG00000261116 GC06P054387 CLNS1AP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CLNS1AP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CLNS1AP1 Gene

Genomic Locations for CLNS1AP1 Gene
1,355 bases
Minus strand
1,355 bases
Minus strand

Genomic View for CLNS1AP1 Gene

Genes around CLNS1AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLNS1AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLNS1AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLNS1AP1 Gene

Function for CLNS1AP1 Gene

Phenotypes From GWAS Catalog for CLNS1AP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLNS1AP1 Gene

Localization for CLNS1AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLNS1AP1 Gene

Pathways & Interactions for CLNS1AP1 Gene

SuperPathways for CLNS1AP1 Gene

No Data Available

Interacting Proteins for CLNS1AP1 Gene

Gene Ontology (GO) - Biological Process for CLNS1AP1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CLNS1AP1 Gene

Drugs & Compounds for CLNS1AP1 Gene

(2) Additional Compounds for CLNS1AP1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with CLNS1AP1: view

Transcripts for CLNS1AP1 Gene

mRNA/cDNA for CLNS1AP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLNS1AP1 Gene

No ASD Table

Relevant External Links for CLNS1AP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CLNS1AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLNS1AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CLNS1AP1 Gene:

genes like me logo Genes that share expression patterns with CLNS1AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLNS1AP1 Gene

Orthologs for CLNS1AP1 Gene

Evolution for CLNS1AP1 Gene

Gene Tree for CLNS1AP1 (if available)
Gene Tree for CLNS1AP1 (if available)

No data available for Orthologs for CLNS1AP1 Gene

Paralogs for CLNS1AP1 Gene

No data available for Paralogs for CLNS1AP1 Gene

Variants for CLNS1AP1 Gene

Additional Variant Information for CLNS1AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLNS1AP1 Gene

Disorders for CLNS1AP1 Gene

No disorders were found for CLNS1AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CLNS1AP1 Gene

Publications for CLNS1AP1 Gene

  1. Characterization of the human gene coding for the swelling-dependent chloride channel ICln at position 11q13.5-14.1 (CLNS1A) and further characterization of the chromosome 6 (CLNS1B) localization. (PMID: 9524223) Nagl UO … Paulmichl M (Gene 1998) 2 3 58
  2. Chromosomal localization of the genes (CLNS1A and CLNS1B) coding for the swelling-dependent chloride channel ICln. (PMID: 8975725) Nagl UO … Paulmichl M (Genomics 1996) 2 3 58
  3. Functional reconstitution of ICln in lipid bilayers. (PMID: 10864003) Fürst J … Paulmichl M (Pflugers Archiv : European journal of physiology 2000) 22 58
  4. Partial structure, chromosome localization, and expression of the mouse Icln gene. (PMID: 9073507) Wickman K … Clapham DE (Genomics 1997) 22 58
  5. ICln, a chloride channel cloned from kidney cells, is activated during regulatory volume decrease. (PMID: 9027725) Laich A … Paulmichl M (Kidney international 1997) 22 58

Products for CLNS1AP1 Gene

Sources for CLNS1AP1 Gene

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