CLIP1-AS1 Gene (RNA Gene)

CLIP1 Antisense RNA 1

GC12P122395
GIFtS:
12
See more...

Aliases for CLIP1-AS1 Gene

Subcategory (RNA class) for CLIP1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CLIP1-AS1 Gene

  • CLIP1 Antisense RNA 1 2 3 5
  • CLIP1-AS1 2 5 165
  • NONHSAG012577.2 91
  • HSALNG0094650 164

External Ids for CLIP1-AS1 Gene

Previous GeneCards Identifiers for CLIP1-AS1 Gene

  • GC12P122881

Summaries for CLIP1-AS1 Gene

GeneCards Summary for CLIP1-AS1 Gene

CLIP1-AS1 (CLIP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CLIP1-AS1 include Astrocytoma.

Additional gene information for CLIP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CLIP1-AS1 Gene

Genomics for CLIP1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for CLIP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J122394 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 600.7 -0.8 -842 3 CREB1 GATAD2A ZNF629 ZNF692 SP1 CEBPA ATF7 CEBPB CTBP1 ATF3 CLIP1-AS1 CLIP1 RSRC2 ZCCHC8 TRD-GTC8-1-001 VPS33A
GH12J122399 Enhancer 0.3 Ensembl dbSUPER 600.7 +1.9 1859 0.4 CLIP1-AS1 CLIP1 VPS33A
GH12J122646 Enhancer 1.1 FANTOM5 ENCODE 4.1 +251.5 251509 1.6 SP1 JUND RELA TCF12 IKZF2 RCOR1 TRIM22 HDAC1 PKNOX1 EP300 HCAR2 HCAR3 ZCCHC8 CLIP1-AS1 VPS37B CLIP1 RSRC2 piR-50444-094 ENSG00000274191 KNTC1
GH12J122659 Enhancer 0.7 Ensembl ENCODE 4.2 +264.3 264282 1.2 CREB1 CTCF USF1 PKNOX1 RAD21 TOE1 RAD51 USF2 SMC3 ZBTB6 lnc-KNTC1-4 piR-61945-114 HCAR3 HCAR1 C12orf65 CLIP1-AS1 lnc-KNTC1-3 HCAR2 KNTC1
GH12J122651 Enhancer 0.3 ENCODE 4.2 +255.3 255307 0.2 ZBTB33 CLIP1-AS1 piR-50444-094 ENSG00000274191 HCAR2 KNTC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CLIP1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CLIP1-AS1 Gene

Genomic Locations for CLIP1-AS1 Gene
chr12:122,395,542-122,474,008
(GRCh38/hg38)
Size:
78,467 bases
Orientation:
Plus strand
chr12:122,880,089-122,885,404
(GRCh37/hg19)
Size:
5,316 bases
Orientation:
Plus strand

Genomic View for CLIP1-AS1 Gene

Genes around CLIP1-AS1 on UCSC Golden Path with GeneCards custom track
CLIP1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CLIP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLIP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CLIP1-AS1 Gene

Proteins for CLIP1-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for CLIP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLIP1-AS1 Gene

Domains & Families for CLIP1-AS1 Gene

Gene Families for CLIP1-AS1 Gene

HGNC:
genes like me logo Genes that share domains with CLIP1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CLIP1-AS1 Gene

Function for CLIP1-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for CLIP1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLIP1-AS1 Gene

Localization for CLIP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLIP1-AS1 Gene

Pathways & Interactions for CLIP1-AS1 Gene

PathCards logo

SuperPathways for CLIP1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CLIP1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CLIP1-AS1 Gene

Drugs & Compounds for CLIP1-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CLIP1-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CLIP1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000041379A_9606 lncRNA 1745 4

Ensembl: ENST00000535976 (view in UCSC) ,

LncBook: HSALNT0196221,

LNCipedia: CLIP1-AS1:4,

NONCODE: NONHSAT031507.2,

URS00005BB415_9606 lncRNA 447 3

Ensembl: ENST00000539034 (view in UCSC) ,

LncBook: HSALNT0196216,

LNCipedia: CLIP1-AS1:1,

URS000075B10A_9606 lncRNA 896 2

HGNC: 48586,

RefSeq: NR_045382,

URS00008BA100_9606 lncRNA 896 2

LncBook: HSALNT0196217,

LNCipedia: CLIP1-AS1:2,

URS00008B8C30_9606 lncRNA 694 2

LNCipedia: CLIP1-AS1:3,

NONCODE: NONHSAT031506.2,

CLIP1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CLIP1-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CLIP1-AS1 Gene

No ASD Table

Relevant External Links for CLIP1-AS1 Gene

GeneLoc Exon Structure for
CLIP1-AS1

Expression for CLIP1-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CLIP1-AS1 Gene

mRNA expression in normal human tissues for CLIP1-AS1 Gene
mRNA expression by GTEx for CLIP1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CLIP1-AS1

genes like me logo Genes that share expression patterns with CLIP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLIP1-AS1 Gene

Orthologs for CLIP1-AS1 Gene

Evolution for CLIP1-AS1 Gene

ENSEMBL:
Gene Tree for CLIP1-AS1 (if available)
TreeFam:
Gene Tree for CLIP1-AS1 (if available)

No data available for Orthologs for CLIP1-AS1 Gene

Paralogs for CLIP1-AS1 Gene

No data available for Paralogs for CLIP1-AS1 Gene

Variants for CLIP1-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for CLIP1-AS1 Gene

Additional Variant Information for CLIP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLIP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLIP1-AS1 Gene

Disorders for CLIP1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CLIP1-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CLIP1-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with CLIP1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CLIP1-AS1 Gene

Publications for CLIP1-AS1 Gene

No publications were found for CLIP1-AS1 Gene.

No data available for Mastermind for CLIP1-AS1 Gene

Products for CLIP1-AS1 Gene

Sources for CLIP1-AS1 Gene