Aliases for CLIP1-AS1 Gene

Data sources for CLIP1-AS1 Gene:

Subcategory (RNA class) for CLIP1-AS1 Gene

lncRNA

Aliases for CLIP1-AS1 Gene

External Ids for CLIP1-AS1 Gene

Previous GeneCards Identifiers for CLIP1-AS1 Gene

  • GC12P122881

Summaries for CLIP1-AS1 Gene

GeneCards Summary for CLIP1-AS1 Gene

CLIP1-AS1 (CLIP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CLIP1-AS1 include Glioma Susceptibility 1.

Additional gene information for CLIP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CLIP1-AS1 Gene

Genomics for CLIP1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CLIP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J122394 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 250.7 -0.9 -909 2.9 CEBPA RXRA CTBP1 ZBTB33 ATF1 INSM2 JUND CEBPG ZBTB21 ATF4 CLIP1-AS1 CLIP1 ZCCHC8 TRD-GTC8-1 VPS33A
GH12J122646 Enhancer 1.1 FANTOM5 ENCODE 4.1 +251.5 251510 1.6 SP1 BCL11A MNT BHLHE40 TRIM22 IRF4 EBF1 MAX FOSL1 CBFB HCAR2 HCAR3 ZCCHC8 CLIP1-AS1 VPS37B CLIP1 RSRC2 HSALNG0094668 piR-50444-094 KNTC1
GH12J122659 Enhancer 0.7 Ensembl ENCODE 4.2 +264.3 264283 1.2 CTCF RAD21 PKNOX1 RAD51 USF2 CREB1 SMC3 ZBTB6 USF1 piR-61945-114 HCAR3 HCAR1 MTRFR CLIP1-AS1 lnc-KNTC1-3 HCAR2 KNTC1
GH12J122651 Enhancer 0.3 ENCODE 4.2 +255.3 255308 0.2 ZBTB33 CLIP1-AS1 piR-50444-094 HSALNG0094668 HCAR2 KNTC1
GH12J122419 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +26.6 26568 4.3 TBP NR2C1 IKZF1 SMAD5 POLR2A CTCF NONO ZIC2 CEBPB SIN3A CLIP1 RSRC2 ZCCHC8 LINC01089 ENSG00000252192 ENSG00000272849 KDM2B MTRFR SBNO1 PITPNM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CLIP1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CLIP1-AS1 Gene

Latest Assembly
chr12:122,395,541-122,474,008
(GRCh38/hg38)
Size:
78,468 bases
Orientation:
Plus strand

Previous Assembly
chr12:122,880,089-122,884,491
(GRCh37/hg19 by Entrez Gene)
Size:
4,403 bases
Orientation:
Plus strand

chr12:122,880,089-122,885,404
(GRCh37/hg19 by Ensembl)
Size:
5,316 bases
Orientation:
Plus strand

Genomic View for CLIP1-AS1 Gene

Genes around CLIP1-AS1 on UCSC Golden Path with GeneCards custom track
CLIP1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CLIP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLIP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLIP1-AS1 Gene

Proteins for CLIP1-AS1 Gene

Post-translational modifications for CLIP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLIP1-AS1 Gene

Domains & Families for CLIP1-AS1 Gene

Gene Families for CLIP1-AS1 Gene

genes like me logo Genes that share domains with CLIP1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CLIP1-AS1 Gene

Function for CLIP1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLIP1-AS1 Gene

Localization for CLIP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLIP1-AS1 Gene

Pathways & Interactions for CLIP1-AS1 Gene

PathCards logo

SuperPathways for CLIP1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CLIP1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CLIP1-AS1 Gene

Drugs & Compounds for CLIP1-AS1 Gene

No Compound Related Data Available

Transcripts for CLIP1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CLIP1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000041379A_9606 lncRNA 1748 4

Ensembl: ENST00000535976 (view in UCSC) ,

LncBook: HSALNT0196221,

LNCipedia: CLIP1-AS1:4,

NONCODE: NONHSAT031507.2,

URS00005BB415_9606 lncRNA 447 3

Ensembl: ENST00000539034 (view in UCSC) ,

LncBook: HSALNT0196216,

LNCipedia: CLIP1-AS1:1,

URS000075B10A_9606 lncRNA 896 1

RefSeq: NR_045382,

URS00008BA100_9606 lncRNA 899 2

LncBook: HSALNT0196217,

LNCipedia: CLIP1-AS1:2,

URS00008B8C30_9606 lncRNA 694 2

LNCipedia: CLIP1-AS1:3,

NONCODE: NONHSAT031506.2,

CLIP1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CLIP1-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CLIP1-AS1 Gene

No ASD Table

Relevant External Links for CLIP1-AS1 Gene

GeneLoc Exon Structure for
CLIP1-AS1

Expression for CLIP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CLIP1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CLIP1-AS1

genes like me logo Genes that share expression patterns with CLIP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLIP1-AS1 Gene

Orthologs for CLIP1-AS1 Gene

Evolution for CLIP1-AS1 Gene

ENSEMBL:
Gene Tree for CLIP1-AS1 (if available)
TreeFam:
Gene Tree for CLIP1-AS1 (if available)

No data available for Orthologs for CLIP1-AS1 Gene

Paralogs for CLIP1-AS1 Gene

No data available for Paralogs for CLIP1-AS1 Gene

Variants for CLIP1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CLIP1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for CLIP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLIP1-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLIP1-AS1 Gene

Disorders for CLIP1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CLIP1-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
glioma susceptibility 1
  • glm1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CLIP1-AS1

genes like me logo Genes that share disorders with CLIP1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CLIP1-AS1 Gene

Publications for CLIP1-AS1 Gene

  1. The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F … Yang Y (PloS one 2015) 74

No data available for Mastermind for CLIP1-AS1 Gene

Products for CLIP1-AS1 Gene

Sources for CLIP1-AS1 Gene