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Aliases for CLIP1-AS1 Gene

Subcategory (RNA class) for CLIP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CLIP1-AS1 Gene

  • CLIP1 Antisense RNA 1 2 3 5

External Ids for CLIP1-AS1 Gene

Previous GeneCards Identifiers for CLIP1-AS1 Gene

  • GC12P122881

Summaries for CLIP1-AS1 Gene

GeneCards Summary for CLIP1-AS1 Gene

CLIP1-AS1 (CLIP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CLIP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLIP1-AS1 Gene

Genomics for CLIP1-AS1 Gene

GeneHancer (GH) Regulatory Elements for CLIP1-AS1 Gene

Promoters and enhancers for CLIP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I122394 Enhancer 1.2 Ensembl ENCODE dbSUPER 550.8 -0.1 -126 1.3 ATF1 ZBTB21 JUN INSM2 CEBPG YY1 ZNF335 CTBP1 GATA3 ZNF366 CLIP1-AS1 CLIP1 RPL21P1
GH12I122646 Enhancer 1.3 FANTOM5 Ensembl ENCODE 4.1 +251.5 251493 1.7 HDAC1 PKNOX1 BMI1 BATF KLF5 IRF4 ATF7 ETV6 FOS IKZF2 HCAR2 HCAR3 CCDC150P1 ZCCHC8 CLIP1-AS1 VPS37B CLIP1 RSRC2 ENSG00000274191 ENSG00000256249
GH12I122651 Enhancer 0.3 ENCODE 4.2 +255.3 255307 0.2 ZBTB33 CLIP1-AS1 ENSG00000274191 ENSG00000256249
GH12I122398 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 0.4 +5.8 5827 6 PKNOX1 SMAD1 FOXA2 ARNT ARID4B NEUROD1 SIN3A FEZF1 DMAP1 YY1 CLIP1 PSMD9 ZCCHC8 KNTC1 RSRC2 ENSG00000252192 ENSG00000272849 CCDC62 MLXIP CLIP1-AS1
GH12I122419 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 +26.6 26567 4.3 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 SLC30A9 ZNF766 ZNF143 REST ZNF592 CLIP1 PSMD9 KNTC1 ZCCHC8 ENSG00000252192 RSRC2 DIABLO PITPNM2 ARL6IP4 CCDC62
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CLIP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CLIP1-AS1 Gene

Genomic Locations for CLIP1-AS1 Gene
chr12:122,395,542-122,400,857
(GRCh38/hg38)
Size:
5,316 bases
Orientation:
Plus strand
chr12:122,880,089-122,885,404
(GRCh37/hg19)

Genomic View for CLIP1-AS1 Gene

Genes around CLIP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLIP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLIP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLIP1-AS1 Gene

Proteins for CLIP1-AS1 Gene

Post-translational modifications for CLIP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLIP1-AS1 Gene

Domains & Families for CLIP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLIP1-AS1 Gene

Function for CLIP1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLIP1-AS1 Gene

Localization for CLIP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLIP1-AS1 Gene

Pathways & Interactions for CLIP1-AS1 Gene

SuperPathways for CLIP1-AS1 Gene

No Data Available

Interacting Proteins for CLIP1-AS1 Gene

Gene Ontology (GO) - Biological Process for CLIP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLIP1-AS1 Gene

Drugs & Compounds for CLIP1-AS1 Gene

No Compound Related Data Available

Transcripts for CLIP1-AS1 Gene

mRNA/cDNA for CLIP1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLIP1-AS1 Gene

No ASD Table

Relevant External Links for CLIP1-AS1 Gene

GeneLoc Exon Structure for
CLIP1-AS1
ECgene alternative splicing isoforms for
CLIP1-AS1

Expression for CLIP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLIP1-AS1 Gene

genes like me logo Genes that share expression patterns with CLIP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLIP1-AS1 Gene

Orthologs for CLIP1-AS1 Gene

Evolution for CLIP1-AS1 Gene

ENSEMBL:
Gene Tree for CLIP1-AS1 (if available)
TreeFam:
Gene Tree for CLIP1-AS1 (if available)

No data available for Orthologs for CLIP1-AS1 Gene

Paralogs for CLIP1-AS1 Gene

No data available for Paralogs for CLIP1-AS1 Gene

Variants for CLIP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for CLIP1-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000113787 -- 122,393,868(+) G/A upstream_transcript_variant
rs1000497707 -- 122,399,112(+) T/C intron_variant
rs1000619622 -- 122,396,430(+) A/G intron_variant
rs1001326669 -- 122,399,807(+) C/T non_coding_transcript_variant
rs1001630493 -- 122,400,039(+) G/A downstream_transcript_variant

Additional Variant Information for CLIP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLIP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLIP1-AS1 Gene

Disorders for CLIP1-AS1 Gene

Additional Disease Information for CLIP1-AS1

No disorders were found for CLIP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLIP1-AS1 Gene

Publications for CLIP1-AS1 Gene

No publications were found for CLIP1-AS1 Gene.

Products for CLIP1-AS1 Gene

Sources for CLIP1-AS1 Gene

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