Aliases for CLEC4O Gene

Aliases for CLEC4O Gene

  • C-Type Lectin Domain Family 4 Member O 2 3
  • Long Intergenic Non-Protein Coding RNA 1835 2 3 5
  • LINC01835 3 5
  • Uncharacterized Protein LOC102724279 3

External Ids for CLEC4O Gene

Previous HGNC Symbols for CLEC4O Gene

  • LINC01835

Summaries for CLEC4O Gene

GeneCards Summary for CLEC4O Gene

CLEC4O (C-Type Lectin Domain Family 4 Member O) is a Protein Coding gene.

Additional gene information for CLEC4O Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CLEC4O Gene

Genomics for CLEC4O Gene

GeneHancer (GH) Regulatory Elements for CLEC4O Gene

Promoters and enhancers for CLEC4O Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J015863 Promoter/Enhancer 1.1 FANTOM5 Ensembl dbSUPER 772.6 +1.7 1688 0.8 SMARCE1 EGR1 IKZF1 RFX1 NRF1 FOSL1 NFE2 CLEC4O LOC105369202 lnc-CYP4F2-1 CYP4F11 piR-30876-048 lnc-OR7C2-1
GH19J015866 Enhancer 0.5 Ensembl dbSUPER 786.9 -2.0 -1997 0.6 SP1 YY1 CLEC4O lnc-CYP4F2-1 CYP4F36P lnc-OR7C2-1
GH19J015864 Enhancer 0.4 dbSUPER 787.5 -0.2 -212 0.8 HDAC1 CTBP1 IKZF1 CLEC4O LOC105369202 lnc-CYP4F2-1 CYP4F11 CYP4F36P lnc-OR7C2-1
GH19J015865 Enhancer 0.2 FANTOM5 750.6 +0.4 449 0.1 CLEC4O LOC105369202 lnc-CYP4F2-1 OR10H3 OR10H2 lnc-OR7C2-1
GH19J016063 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.2 -208.0 -208009 18.7 GTF3C2 ZNF24 ZBTB40 CTCF SREBF1 ZBTB6 RBPJ SMARCE1 POLR2A NR2F1 TPM4 AKAP8 CHERP ENSG00000269578 C19orf44 BRD4 ENSG00000268087 ENSG00000267904 ENSG00000268743 MED26
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CLEC4O on UCSC Golden Path with GeneCards custom track

Genomic Locations for CLEC4O Gene

Genomic Locations for CLEC4O Gene
chr19:15,851,993-15,864,904
(GRCh38/hg38)
Size:
12,912 bases
Orientation:
Minus strand

Genomic View for CLEC4O Gene

Genes around CLEC4O on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLEC4O Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLEC4O Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC4O Gene

Proteins for CLEC4O Gene

Post-translational modifications for CLEC4O Gene

No Post-translational modifications

Other Protein References for CLEC4O Gene

REFSEQ proteins:

No data available for DME Specific Peptides for CLEC4O Gene

Domains & Families for CLEC4O Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CLEC4O Gene

Function for CLEC4O Gene

Phenotypes From GWAS Catalog for CLEC4O Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLEC4O Gene

Localization for CLEC4O Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLEC4O Gene

Pathways & Interactions for CLEC4O Gene

PathCards logo

SuperPathways for CLEC4O Gene

No Data Available

Interacting Proteins for CLEC4O Gene

Gene Ontology (GO) - Biological Process for CLEC4O Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLEC4O Gene

Drugs & Compounds for CLEC4O Gene

No Compound Related Data Available

Transcripts for CLEC4O Gene

mRNA/cDNA for CLEC4O Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC4O Gene

No ASD Table

Relevant External Links for CLEC4O Gene

GeneLoc Exon Structure for
CLEC4O
ECgene alternative splicing isoforms for
CLEC4O

Expression for CLEC4O Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLEC4O Gene

Orthologs for CLEC4O Gene

Evolution for CLEC4O Gene

ENSEMBL:
Gene Tree for CLEC4O (if available)
TreeFam:
Gene Tree for CLEC4O (if available)

No data available for Orthologs for CLEC4O Gene

Paralogs for CLEC4O Gene

No data available for Paralogs for CLEC4O Gene

Variants for CLEC4O Gene

Sequence variations from dbSNP and Humsavar for CLEC4O Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000594573 -- 15,864,530(-) A/G intron_variant
rs1000606594 -- 15,866,789(-) C/A/T upstream_transcript_variant
rs1000784617 -- 15,854,344(-) C/A intron_variant
rs1000805228 -- 15,862,645(-) G/A intron_variant
rs1000887978 -- 15,859,653(-) G/A intron_variant

Additional Variant Information for CLEC4O Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLEC4O

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLEC4O Gene

Disorders for CLEC4O Gene

No disorders were found for CLEC4O Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CLEC4O Gene

Publications for CLEC4O Gene

  1. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim YC … Wang SM (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 56

Products for CLEC4O Gene

Sources for CLEC4O Gene