Aliases for CLEC4GP1 Gene

Aliases for CLEC4GP1 Gene

  • C-Type Lectin Domain Family 4 Member G Pseudogene 1 2 3 5
  • C-Type Lectin Domain Family 4, Member G Pseudogene 1 2
  • C-Type Lectin Superfamily 4, Member G Pseudogene 3

External Ids for CLEC4GP1 Gene

Previous GeneCards Identifiers for CLEC4GP1 Gene

  • GC19P007759
  • GC19P007852
  • GC19P007522

Summaries for CLEC4GP1 Gene

GeneCards Summary for CLEC4GP1 Gene

CLEC4GP1 (C-Type Lectin Domain Family 4 Member G Pseudogene 1) is a Pseudogene.

Additional gene information for CLEC4GP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CLEC4GP1 Gene

Genomics for CLEC4GP1 Gene

GeneHancer (GH) Regulatory Elements for CLEC4GP1 Gene

Promoters and enhancers for CLEC4GP1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J007787 Enhancer 0.2 ENCODE 750.6 -0.1 -94 0.2 CLEC4GP1 lnc-EVI5L-5 lnc-CLEC4M-2
GH19J007784 Enhancer 1 Ensembl ENCODE 16.8 -3.4 -3383 1.8 TCF7L2 HLF MNT NCOA3 MAFK CEBPG PRDM1 FOSL2 CEBPA REST CLEC4GP1 lnc-EVI5L-5 lnc-CLEC4M-2 LOC105372263
GH19J007791 Enhancer 0.7 Ensembl ENCODE 14.9 +4.9 4887 1.6 CREB1 REST CTBP1 DPF2 ZNF217 GATA3 KLF16 CBFA2T3 SMARCE1 CLEC4GP1 TRAPPC5 MCEMP1 RPL21P129 CD209 CLEC4G CAMSAP3 lnc-EVI5L-5 piR-50852-066
GH19J007779 Enhancer 0.7 Ensembl ENCODE 13.1 -8.3 -8261 2.5 TCF7L2 NCOA3 CREB1 PKNOX1 ZNF544 CTBP1 MNT EED POLR2A DPF2 lnc-CLEC4M-2 RPL21P129 CD209 CLEC4GP1 CLEC4G FCER2 TRAPPC5 MCEMP1 ZNF414 HSALNG0123673
GH19J007772 Enhancer 0.8 ENCODE 5.7 -14.6 -14614 0.2 SMARCE1 MYC TEAD4 NKRF MLLT1 PRDM1 CREM IKZF1 BACH1 TRIM22 HSALNG0123673 RPL21P129 CD209 FCER2 CLEC4G CLEC4GP1 LOC105372263
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CLEC4GP1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the CLEC4GP1 gene promoter:
  • AREB6
  • c-Myc
  • Evi-1
  • GATA-1
  • GATA-2
  • Max1
  • Pax-2
  • Pax-2a
  • RORalpha1
  • TBP

Genomic Locations for CLEC4GP1 Gene

Genomic Locations for CLEC4GP1 Gene
3,529 bases
Plus strand
3,529 bases
Plus strand

Genomic View for CLEC4GP1 Gene

Genes around CLEC4GP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLEC4GP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLEC4GP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC4GP1 Gene

Proteins for CLEC4GP1 Gene

Post-translational modifications for CLEC4GP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLEC4GP1 Gene

Domains & Families for CLEC4GP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CLEC4GP1 Gene

Function for CLEC4GP1 Gene

Phenotypes From GWAS Catalog for CLEC4GP1 Gene

Phenotypes for CLEC4GP1 Gene

genes like me logo Genes that share phenotypes with CLEC4GP1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLEC4GP1 Gene

Localization for CLEC4GP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLEC4GP1 Gene

Pathways & Interactions for CLEC4GP1 Gene

PathCards logo

SuperPathways for CLEC4GP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CLEC4GP1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CLEC4GP1 Gene

Drugs & Compounds for CLEC4GP1 Gene

No Compound Related Data Available

Transcripts for CLEC4GP1 Gene

mRNA/cDNA for CLEC4GP1 Gene

(4) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC4GP1 Gene

No ASD Table

Relevant External Links for CLEC4GP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CLEC4GP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLEC4GP1 Gene

mRNA differential expression in normal tissues according to GTEx for CLEC4GP1 Gene

This gene is overexpressed in Brain - Cerebellum (x13.1), Brain - Cerebellar Hemisphere (x12.8), and Adrenal Gland (x7.6).

NURSA nuclear receptor signaling pathways regulating expression of CLEC4GP1 Gene:


SOURCE GeneReport for Unigene cluster for CLEC4GP1 Gene:

genes like me logo Genes that share expression patterns with CLEC4GP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLEC4GP1 Gene

Orthologs for CLEC4GP1 Gene

Evolution for CLEC4GP1 Gene

Gene Tree for CLEC4GP1 (if available)
Gene Tree for CLEC4GP1 (if available)

No data available for Orthologs for CLEC4GP1 Gene

Paralogs for CLEC4GP1 Gene

No data available for Paralogs for CLEC4GP1 Gene

Variants for CLEC4GP1 Gene

Sequence variations from dbSNP and Humsavar for CLEC4GP1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000108741 -- 7,785,829(+) T/C upstream_transcript_variant
rs1000564008 -- 7,786,012(+) T/A upstream_transcript_variant
rs1000888111 -- 7,789,357(+) C/G intron_variant
rs1000908856 -- 7,789,341(+) C/A intron_variant
rs1000960896 -- 7,789,563(+) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CLEC4GP1 Gene

Variant ID Type Subtype PubMed ID
esv2751809 CNV gain 17911159
nsv1058579 CNV gain 25217958
nsv1060887 CNV gain 25217958
nsv833732 CNV gain 17160897

Additional Variant Information for CLEC4GP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLEC4GP1 Gene

Disorders for CLEC4GP1 Gene

Additional Disease Information for CLEC4GP1

No disorders were found for CLEC4GP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLEC4GP1 Gene

Publications for CLEC4GP1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for CLEC4GP1 Gene

Sources for CLEC4GP1 Gene