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Aliases for CLEC4GP1 Gene

Aliases for CLEC4GP1 Gene

  • C-Type Lectin Domain Family 4 Member G Pseudogene 1 2 3 5
  • C-Type Lectin Domain Family 4, Member G Pseudogene 1 2

External Ids for CLEC4GP1 Gene

Previous GeneCards Identifiers for CLEC4GP1 Gene

  • GC19P007759
  • GC19P007852
  • GC19P007522

Summaries for CLEC4GP1 Gene

GeneCards Summary for CLEC4GP1 Gene

CLEC4GP1 (C-Type Lectin Domain Family 4 Member G Pseudogene 1) is a Pseudogene.

Additional gene information for CLEC4GP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLEC4GP1 Gene

Genomics for CLEC4GP1 Gene

GeneHancer (GH) Regulatory Elements for CLEC4GP1 Gene

Promoters and enhancers for CLEC4GP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I007787 Enhancer 0.3 ENCODE 550.8 -0.1 -94 0.2 EZH2 CLEC4GP1 GC19P007785
GH19I007772 Enhancer 1 Ensembl ENCODE 9.5 -14.5 -14483 0.8 PKNOX1 SMAD1 BMI1 BATF KLF5 ZSCAN5C ATF7 BCLAF1 IKZF2 RUNX3 RPL21P129 CD209 FCER2 CLEC4G CLEC4GP1 LOC105372263 GC19P007785
GH19I007791 Enhancer 0.6 ENCODE 15 +4.9 4887 1.6 SMARCE1 CBFA2T3 REST DPF2 ZNF217 CTBP1 GATA3 KLF16 CREB1 CLEC4GP1 TRAPPC5 MCEMP1 RPL21P129 CD209 CLEC4G CAMSAP3 EXOSC3P2
GH19I007779 Enhancer 0.6 ENCODE 13.1 -7.6 -7605 1.2 NCOA3 MEIS2 PKNOX1 DPF2 MNT GATA3 CTBP1 ZNF544 TCF7L2 CLEC4GP1 RPL21P129 CD209 CLEC4G FCER2 TRAPPC5 MCEMP1 ZNF414 GC19P007785 LOC105372263
GH19I007799 Enhancer 1 Ensembl ENCODE 0.4 +12.4 12417 1.4 KLF17 MZF1 RAD21 RFX5 ZNF335 ZNF143 IKZF2 MIXL1 ZNF654 CEBPB TRAPPC5 MCEMP1 CLEC4G RPL21P129 CD209 XAB2 PET100 LRRC8E PRR36 EXOSC3P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CLEC4GP1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the CLEC4GP1 gene promoter:

Genomic Locations for CLEC4GP1 Gene

Genomic Locations for CLEC4GP1 Gene
chr19:7,787,484-7,791,012
(GRCh38/hg38)
Size:
3,529 bases
Orientation:
Plus strand
chr19:7,852,370-7,855,898
(GRCh37/hg19)

Genomic View for CLEC4GP1 Gene

Genes around CLEC4GP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLEC4GP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLEC4GP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC4GP1 Gene

Proteins for CLEC4GP1 Gene

Post-translational modifications for CLEC4GP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLEC4GP1 Gene

Domains & Families for CLEC4GP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLEC4GP1 Gene

Function for CLEC4GP1 Gene

Phenotypes From GWAS Catalog for CLEC4GP1 Gene

Phenotypes for CLEC4GP1 Gene

GenomeRNAi human phenotypes for CLEC4GP1:
genes like me logo Genes that share phenotypes with CLEC4GP1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLEC4GP1 Gene

Localization for CLEC4GP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLEC4GP1 Gene

Pathways & Interactions for CLEC4GP1 Gene

SuperPathways for CLEC4GP1 Gene

No Data Available

Interacting Proteins for CLEC4GP1 Gene

Gene Ontology (GO) - Biological Process for CLEC4GP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLEC4GP1 Gene

Drugs & Compounds for CLEC4GP1 Gene

No Compound Related Data Available

Transcripts for CLEC4GP1 Gene

mRNA/cDNA for CLEC4GP1 Gene

(5) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CLEC4GP1 Gene

C-type lectin domain family 4, member G pseudogene 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC4GP1 Gene

No ASD Table

Relevant External Links for CLEC4GP1 Gene

GeneLoc Exon Structure for
CLEC4GP1
ECgene alternative splicing isoforms for
CLEC4GP1

Expression for CLEC4GP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLEC4GP1 Gene

mRNA differential expression in normal tissues according to GTEx for CLEC4GP1 Gene

This gene is overexpressed in Brain - Cerebellum (x13.1), Brain - Cerebellar Hemisphere (x12.8), and Adrenal Gland (x7.6).

NURSA nuclear receptor signaling pathways regulating expression of CLEC4GP1 Gene:

CLEC4GP1

SOURCE GeneReport for Unigene cluster for CLEC4GP1 Gene:

Hs.568222
genes like me logo Genes that share expression patterns with CLEC4GP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLEC4GP1 Gene

Orthologs for CLEC4GP1 Gene

Evolution for CLEC4GP1 Gene

ENSEMBL:
Gene Tree for CLEC4GP1 (if available)
TreeFam:
Gene Tree for CLEC4GP1 (if available)

No data available for Orthologs for CLEC4GP1 Gene

Paralogs for CLEC4GP1 Gene

No data available for Paralogs for CLEC4GP1 Gene

Variants for CLEC4GP1 Gene

Sequence variations from dbSNP and Humsavar for CLEC4GP1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000108741 -- 7,785,829(+) T/C upstream_transcript_variant
rs1000564008 -- 7,786,012(+) T/A upstream_transcript_variant
rs1000888111 -- 7,789,357(+) C/G intron_variant
rs1000908856 -- 7,789,341(+) C/A intron_variant
rs1000960896 -- 7,789,563(+) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CLEC4GP1 Gene

Variant ID Type Subtype PubMed ID
esv2751809 CNV gain 17911159
nsv1058579 CNV gain 25217958
nsv1060887 CNV gain 25217958
nsv833732 CNV gain 17160897

Additional Variant Information for CLEC4GP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLEC4GP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLEC4GP1 Gene

Disorders for CLEC4GP1 Gene

Additional Disease Information for CLEC4GP1

No disorders were found for CLEC4GP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLEC4GP1 Gene

Publications for CLEC4GP1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CLEC4GP1 Gene

Sources for CLEC4GP1 Gene

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