Aliases for CLEC20A Gene

Aliases for CLEC20A Gene

  • C-Type Lectin Domain Containing 20A 2 3 5
  • Long Intergenic Non-Protein Coding RNA 83 2 3
  • C-Type Lectin Domain Family 20 Member A 2 3
  • Putative C-Type Lectin Domain Family 20 Member A 4
  • Non-Protein Coding RNA 83 2
  • RP4-593C16.2 2
  • NCRNA00083 3
  • LINC00083 3
  • FLJ44005 2
  • CLEC20A 5

External Ids for CLEC20A Gene

Previous HGNC Symbols for CLEC20A Gene

  • NCRNA00083
  • LINC00083

Summaries for CLEC20A Gene

GeneCards Summary for CLEC20A Gene

CLEC20A (C-Type Lectin Domain Containing 20A) is a Protein Coding gene.

Additional gene information for CLEC20A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CLEC20A Gene

Genomics for CLEC20A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CLEC20A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J178499 Promoter 0.3 EPDnew 615.2 +0.1 142 0.1 CLEC20A lnc-CLEC20A-1 TEX35 lnc-ANGPTL1-11 RASAL2
GH01J178500 Enhancer 0.3 Ensembl 605.4 -0.8 -767 0.4 CTCF CLEC20A lnc-CLEC20A-1 LOC101928866 TEX35
GH01J178664 Promoter/Enhancer 1 EPDnew Ensembl ENCODE 9.8 -165.9 -165867 3.8 YY1 CEBPB TCF12 NBN CEBPG SPI1 POLR2A RAD51 CTCF RALGPS2 C1orf220 CLEC20A ENSG00000273384 MIR4424 TEX35
GH01J178310 Enhancer 0.9 Ensembl ENCODE 10.7 +188.3 188333 1.8 CEBPG GATAD2A CTCF TFE3 RFX1 ZNF692 ZNF7 FOXA1 PRDM1 ZSCAN4 CLEC20A C1orf220 RASAL2 LOC105371629 piR-36575-009
GH01J178299 Enhancer 0.8 Ensembl ENCODE 11.5 +198.8 198833 2.8 CTCF ZNF143 RAD21 TRIM22 SCRT2 OSR2 ZBTB17 NR2F2 RFX5 SMC3 CLEC20A C1orf220 RASAL2 SEC16B CRYZL2P LOC105371629 piR-36575-009
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CLEC20A on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CLEC20A Gene

Genomic Locations for CLEC20A Gene
chr1:178,478,153-178,499,634
(GRCh38/hg38)
Size:
21,482 bases
Orientation:
Minus strand
chr1:178,463,491-178,464,192
(GRCh37/hg19)
Size:
702 bases
Orientation:
Minus strand

Genomic View for CLEC20A Gene

Genes around CLEC20A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLEC20A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLEC20A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLEC20A Gene

Proteins for CLEC20A Gene

  • Protein details for CLEC20A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZU45-CL20A_HUMAN
    Recommended name:
    Putative C-type lectin domain family 20 member A
    Protein Accession:
    Q6ZU45
    Secondary Accessions:
    • A0A1B0GWE9

    Protein attributes for CLEC20A Gene

    Size:
    400 amino acids
    Molecular mass:
    44255 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC86382.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};

neXtProt entry for CLEC20A Gene

Post-translational modifications for CLEC20A Gene

No Post-translational modifications

Other Protein References for CLEC20A Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for CLEC20A Gene

Domains & Families for CLEC20A Gene

Gene Families for CLEC20A Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CLEC20A Gene

Suggested Antigen Peptide Sequences for CLEC20A Gene

GenScript: Design optimal peptide antigens:
  • Putative C-type lectin domain-containing protein NCRNA00083 (YA021_HUMAN)
genes like me logo Genes that share domains with CLEC20A: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CLEC20A Gene

Function for CLEC20A Gene

Phenotypes From GWAS Catalog for CLEC20A Gene

Gene Ontology (GO) - Molecular Function for CLEC20A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030246 carbohydrate binding IEA --
genes like me logo Genes that share ontologies with CLEC20A: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLEC20A Gene

Localization for CLEC20A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLEC20A Gene

Pathways & Interactions for CLEC20A Gene

PathCards logo

SuperPathways for CLEC20A Gene

No Data Available

Interacting Proteins for CLEC20A Gene

Gene Ontology (GO) - Biological Process for CLEC20A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLEC20A Gene

Drugs & Compounds for CLEC20A Gene

No Compound Related Data Available

Transcripts for CLEC20A Gene

mRNA/cDNA for CLEC20A Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC20A Gene

No ASD Table

Relevant External Links for CLEC20A Gene

GeneLoc Exon Structure for
CLEC20A

Expression for CLEC20A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CLEC20A

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLEC20A Gene

Orthologs for CLEC20A Gene

Evolution for CLEC20A Gene

ENSEMBL:
Gene Tree for CLEC20A (if available)
TreeFam:
Gene Tree for CLEC20A (if available)

No data available for Orthologs for CLEC20A Gene

Paralogs for CLEC20A Gene

No data available for Paralogs for CLEC20A Gene

Variants for CLEC20A Gene

Additional dbSNP identifiers (rs#s) for CLEC20A Gene

Additional Variant Information for CLEC20A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLEC20A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLEC20A Gene

Disorders for CLEC20A Gene

No disorders were found for CLEC20A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLEC20A Gene

Publications for CLEC20A Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4

Products for CLEC20A Gene

Sources for CLEC20A Gene