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Aliases for CLEC20A Gene

Aliases for CLEC20A Gene

  • C-Type Lectin Domain Containing 20A 2 3 5
  • Long Intergenic Non-Protein Coding RNA 83 2 3
  • C-Type Lectin Domain Family 20 Member A 2 3
  • Non-Protein Coding RNA 83 2
  • NCRNA00083 3
  • LINC00083 3

External Ids for CLEC20A Gene

Previous HGNC Symbols for CLEC20A Gene

  • NCRNA00083
  • LINC00083

Summaries for CLEC20A Gene

GeneCards Summary for CLEC20A Gene

CLEC20A (C-Type Lectin Domain Containing 20A) is a Protein Coding gene.

Additional gene information for CLEC20A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLEC20A Gene

Genomics for CLEC20A Gene

GeneHancer (GH) Regulatory Elements for CLEC20A Gene

Promoters and enhancers for CLEC20A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J178499 Promoter 0.5 EPDnew 665.3 +0.1 142 0.1 CLEC20A TEX35 ENSG00000264809
GH01J179364 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.6 -866.1 -866106 2.2 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 YBX1 ZNF2 AXDND1 GC01P179364 LHX4 TDRD5 RN7SL230P ENSG00000261831 CLEC20A RALGPS2 SOAT1 TOR3A
GH01J179292 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.6 -795.0 -795048 3.4 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SOAT1 GC01P179293 LHX4 TOR3A AXDND1 ENSG00000261831 RN7SL230P CLEC20A TDRD5 LOC100420262
GH01J178299 Enhancer 0.9 Ensembl ENCODE 11.5 +199.5 199450 1.2 CTCF PKNOX1 RAD21 RFX5 ZNF664 SCRT2 SMC3 ZNF143 ZNF654 TRIM22 CLEC20A C1orf220 RASAL2 CRYZL2P LOC105371629 ENSG00000270575
GH01J178310 Enhancer 0.8 ENCODE 10.7 +188.8 188763 0.2 PKNOX1 ARID4B BMI1 ZNF2 RAD21 RFX5 YY1 SCRT2 ZNF143 MIXL1 CLEC20A C1orf220 LOC105371629 ENSG00000270575 RASAL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CLEC20A on UCSC Golden Path with GeneCards custom track

Genomic Locations for CLEC20A Gene

Genomic Locations for CLEC20A Gene
chr1:178,478,153-178,499,634
(GRCh38/hg38)
Size:
21,482 bases
Orientation:
Minus strand
chr1:178,463,491-178,464,192
(GRCh37/hg19)

Genomic View for CLEC20A Gene

Genes around CLEC20A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLEC20A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLEC20A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CLEC20A Gene

Proteins for CLEC20A Gene

  • Protein details for CLEC20A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZU45-CL20A_HUMAN
    Recommended name:
    Putative C-type lectin domain family 20 member A
    Protein Accession:
    Q6ZU45
    Secondary Accessions:
    • A0A1B0GWE9

    Protein attributes for CLEC20A Gene

    Size:
    400 amino acids
    Molecular mass:
    44255 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC86382.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};

neXtProt entry for CLEC20A Gene

Post-translational modifications for CLEC20A Gene

No Post-translational modifications

Other Protein References for CLEC20A Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for CLEC20A Gene

Domains & Families for CLEC20A Gene

Gene Families for CLEC20A Gene

Protein Domains for CLEC20A Gene

Suggested Antigen Peptide Sequences for CLEC20A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CLEC20A: view

No data available for UniProtKB/Swiss-Prot for CLEC20A Gene

Function for CLEC20A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLEC20A Gene

Localization for CLEC20A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLEC20A Gene

Pathways & Interactions for CLEC20A Gene

SuperPathways for CLEC20A Gene

No Data Available

Interacting Proteins for CLEC20A Gene

Gene Ontology (GO) - Biological Process for CLEC20A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLEC20A Gene

Drugs & Compounds for CLEC20A Gene

No Compound Related Data Available

Transcripts for CLEC20A Gene

mRNA/cDNA for CLEC20A Gene

(4) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLEC20A Gene

No ASD Table

Relevant External Links for CLEC20A Gene

GeneLoc Exon Structure for
CLEC20A
ECgene alternative splicing isoforms for
CLEC20A

Expression for CLEC20A Gene

NURSA nuclear receptor signaling pathways regulating expression of CLEC20A Gene:

CLEC20A
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLEC20A Gene

Orthologs for CLEC20A Gene

Evolution for CLEC20A Gene

ENSEMBL:
Gene Tree for CLEC20A (if available)
TreeFam:
Gene Tree for CLEC20A (if available)

No data available for Orthologs for CLEC20A Gene

Paralogs for CLEC20A Gene

No data available for Paralogs for CLEC20A Gene

Variants for CLEC20A Gene

Sequence variations from dbSNP and Humsavar for CLEC20A Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000028675 -- 178,497,647(-) A/G intron_variant
rs1000055816 -- 178,486,790(-) GGG/GG intron_variant
rs1000059997 -- 178,497,880(-) G/A intron_variant
rs1000268262 -- 178,483,416(-) G/A intron_variant
rs1000284725 -- 178,480,693(-) C/T intron_variant

Additional Variant Information for CLEC20A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLEC20A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLEC20A Gene

Disorders for CLEC20A Gene

No disorders were found for CLEC20A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLEC20A Gene

Publications for CLEC20A Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58

Products for CLEC20A Gene

Sources for CLEC20A Gene

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