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Aliases for CLCP1 Gene
Aliases for CLCP1 Gene
External Ids for CLCP1 Gene
- HGNC: 19257
- Entrez Gene: 266626
- Ensembl: ENSG00000232305
Previous GeneCards Identifiers for CLCP1 Gene
- GC22U990249
- GC22M016277
- GC22M017904
Summaries for CLCP1 Gene
GeneCards Summary for CLCP1 Gene
CLCP1 (Charcot-Leyden Crystal Protein Pseudogene 1) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CLCP1 Gene
Genomics for CLCP1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for CLCP1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH22J017423 | Enhancer | 0.6 | Ensembl | 600.7 | +0.8 | 812 | 0.7 | CREB1 ATF7 ZNF629 FOXA1 ATF2 CTCF CREM ATF3 JUND NBN | CLCP1 lnc-ATP6V1E1-5 CECR2 CECR3 ADA2 TERF2IPP1 SLC25A18 | |
| GH22J017424 | Enhancer | 0.2 | Ensembl | 600.7 | +0.2 | 150 | 0.2 | CLCP1 lnc-ATP6V1E1-5 CECR2 CECR3 ADA2 TERF2IPP1 SLC25A18 | ||
| GH22J017436 | Enhancer | 0.8 | ENCODE CraniofacialAtlas | 0.4 | -12.2 | -12171 | 1.7 | PRDM10 ZNF629 PRDM1 ZIC2 PATZ1 CTCF EZH2 ZBTB17 ZNF18 ETV1 | CECR2 piR-41594-029 CLCP1 SLC25A18 | |
| GH22J017430 | Enhancer | 0.6 | ENCODE | 0.4 | -5.9 | -5860 | 0.9 | ZBTB17 ATF2 ZFHX2 CEBPG ATF4 CEBPB ATF3 GLIS1 TRIM28 ZNF398 | CECR2 CLCP1 piR-41594-029 SLC25A18 | |
| GH22J017443 | Enhancer | 0.6 | ENCODE | 0.4 | -19.0 | -18996 | 1.5 | NR2C1 NR2C2 GABPA EHMT2 POLR2A ELF1 EZH2 PRDM6 ETV1 SMARCA4 | CECR2 piR-41594-029 lnc-ATP6V1E1-4 CLCP1 SLC25A18 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around CLCP1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for CLCP1 Gene
Genomic Locations for CLCP1 Gene
- chr22:17,424,244-17,424,851
- (GRCh38/hg38)
- Size:
- 608 bases
- Orientation:
- Minus strand
- chr22:17,903,292-17,903,899
- (GRCh37/hg19)
- Size:
- 608 bases
- Orientation:
- Minus strand
Genomic View for CLCP1 Gene
Genes around CLCP1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 22q11.21 by HGNC
- 22q11.21 by Entrez Gene
- 22q11.21 by Ensembl
CLCP1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CLCP1 Gene
Proteins for CLCP1 Gene
Post-translational modifications for CLCP1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CLCP1
- Origene Custom Protein Services for CLCP1
No data available for DME Specific Peptides for CLCP1 Gene
Domains & Families for CLCP1 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CLCP1 Gene
Function for CLCP1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CLCP1 - Select products 50% OFF >
- * CLCP1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for CLCP1
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLCP1 Gene
Localization for CLCP1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLCP1 Gene
Transcripts for CLCP1 Gene
mRNA/cDNA for CLCP1 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000455251 388 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CLCP1 - Select products 50% OFF >
- * CLCP1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for CLCP1
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for CLCP1 Gene
- GeneLoc Exon Structure for
- CLCP1
Expression for CLCP1 Gene
mRNA differential expression in normal tissues according to GTEx for CLCP1 Gene
This gene is overexpressed in Brain - Cerebellum (x13.1), Brain - Cerebellar Hemisphere (x10.2), Muscle - Skeletal (x4.3), and Liver (x4.2).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLCP1 Gene
Orthologs for CLCP1 Gene
No data available for Orthologs for CLCP1 Gene
Paralogs for CLCP1 Gene
No data available for Paralogs for CLCP1 Gene
Variants for CLCP1 Gene
Additional Variant Information for CLCP1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CLCP1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLCP1 Gene
Disorders for CLCP1 Gene
No disorders were found for CLCP1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CLCP1 Gene
Publications for CLCP1 Gene
No publications were found for CLCP1 Gene.
ExternalLinks
Products for CLCP1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CLCP1
- Origene Custom Protein Services for CLCP1
- Browse OriGene Inhibitory RNA Products For CLCP1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CLCP1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CLCP1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for CLCP1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for CLCP1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for CLCP1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for CLCP1
Sources for CLCP1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB