Aliases for CLCN3P1 Gene

Aliases for CLCN3P1 Gene

  • Chloride Voltage-Gated Channel 3 Pseudogene 1 2 3 5
  • Chloride Channel, Voltage-Sensitive 3 Pseudogene 1 2 3
  • CLCN3P1 5

External Ids for CLCN3P1 Gene

Previous GeneCards Identifiers for CLCN3P1 Gene

  • GC09M014989

Summaries for CLCN3P1 Gene

GeneCards Summary for CLCN3P1 Gene

CLCN3P1 (Chloride Voltage-Gated Channel 3 Pseudogene 1) is a Pseudogene.

Additional gene information for CLCN3P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CLCN3P1 Gene

Genomics for CLCN3P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CLCN3P1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J015146 Enhancer 0.7 FANTOM5 Ensembl 250.7 -0.3 -276 1 ATF2 RFX1 ZEB2 ZNF629 ATF7 EZH2 WT1 CLCN3P1 LOC105375981 lnc-TTC39B-4 PSIP1 FREM1 lnc-TTC39B-2 TTC39B
GH09J015144 Enhancer 0.6 Ensembl 250.7 +1.6 1600 1.2 JUND ZNF189 FOXA1 ZNF362 NFIB SP7 ZNF366 ZEB2 ZSCAN21 OSR2 CLCN3P1 LOC105375981 RF00026-1065 RNU6-559P lnc-TTC39B-4 TTC39B FREM1
GH09J015145 Enhancer 0.2 Ensembl 250.7 +0.5 500 0.2 CLCN3P1 LOC105375981 lnc-TTC39B-4 TTC39B FREM1
GH09J015143 Enhancer 0.8 Ensembl ENCODE 0.7 +3.3 3349 0.5 ZNF654 REST TRIM22 CTCF RAD21 RFX5 SMC3 TEAD3 TEAD4 GATA2 HSALNG0070140 RF00026-1065 RNU6-559P CLCN3P1 lnc-TTC39B-4 TTC39B FREM1
GH09J015134 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 0.4 +11.1 11080 1.1 IKZF1 ZNF654 KLF9 REST TRIM22 CTCF RAD21 SMC3 TEAD3 ZNF205 HSALNG0070139 CLCN3P1 lnc-TTC39B-4 HSALNG0070138 TTC39B FREM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CLCN3P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CLCN3P1 Gene

Latest Assembly
225,389 bases
Minus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
13,879 bases
Minus strand

(GRCh37/hg19 by Ensembl)
159,100 bases
Minus strand

Genomic View for CLCN3P1 Gene

Genes around CLCN3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLCN3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLCN3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLCN3P1 Gene

Proteins for CLCN3P1 Gene

Post-translational modifications for CLCN3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLCN3P1 Gene

Domains & Families for CLCN3P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CLCN3P1 Gene

Function for CLCN3P1 Gene

Phenotypes From GWAS Catalog for CLCN3P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLCN3P1 Gene

Localization for CLCN3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLCN3P1 Gene

Pathways & Interactions for CLCN3P1 Gene

PathCards logo

SuperPathways for CLCN3P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CLCN3P1 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CLCN3P1 Gene

Drugs & Compounds for CLCN3P1 Gene

No Compound Related Data Available

Transcripts for CLCN3P1 Gene

mRNA/cDNA for CLCN3P1 Gene

4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLCN3P1 Gene

No ASD Table

Relevant External Links for CLCN3P1 Gene

GeneLoc Exon Structure for

Expression for CLCN3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CLCN3P1 Gene

mRNA differential expression in normal tissues according to GTEx for CLCN3P1 Gene

This gene is overexpressed in Testis (x37.4), Muscle - Skeletal (x10.1), and Cervix - Ectocervix (x5.4).
genes like me logo Genes that share expression patterns with CLCN3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLCN3P1 Gene

Orthologs for CLCN3P1 Gene

Evolution for CLCN3P1 Gene

Gene Tree for CLCN3P1 (if available)
Gene Tree for CLCN3P1 (if available)
Alliance of Genome Resources:
Additional Orthologs for CLCN3P1

No data available for Orthologs for CLCN3P1 Gene

Paralogs for CLCN3P1 Gene

No data available for Paralogs for CLCN3P1 Gene

Variants for CLCN3P1 Gene

Additional Variant Information for CLCN3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
Leiden Open Variation Database (LOVD)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLCN3P1 Gene

Disorders for CLCN3P1 Gene

No disorders were found for CLCN3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CLCN3P1 Gene

Publications for CLCN3P1 Gene

No publications were found for CLCN3P1 Gene.

Products for CLCN3P1 Gene

Sources for CLCN3P1 Gene