Aliases for CLCA4-AS1 Gene

Subcategory (RNA class) for CLCA4-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CLCA4-AS1 Gene

  • CLCA4 Antisense RNA 1 2 3 5
  • CLCA4-AS1 2 5
  • NONHSAG001983.2 91
  • HSALNG0004920 164
  • Lnc-SELENOF-2 165

External Ids for CLCA4-AS1 Gene

Previous GeneCards Identifiers for CLCA4-AS1 Gene

  • GC01M086705

Summaries for CLCA4-AS1 Gene

GeneCards Summary for CLCA4-AS1 Gene

CLCA4-AS1 (CLCA4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CLCA4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CLCA4-AS1 Gene

Genomics for CLCA4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CLCA4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J086703 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.4 -430 5.2 BRCA1 SP1 GATAD2A CTCF HNRNPL PRDM10 ZNF629 TFE3 IKZF1 NFKBIZ ENSG00000261737 SH3GLB1 CLCA4-AS1 ODF2L piR-56480-003 SELENOF
GH01J086482 Enhancer 0.4 Ensembl 10 +222.9 222853 0.6 ATF7 CREB1 ATF2 CBFA2T3 CLCA2 CLCA4-AS1 ODF2L CLCA1 lnc-ODF2L-1 CLCA4
GH01J086695 Enhancer 0.5 Ensembl 0.4 +9.0 8953 2.8 FOXA1 FOXA2 JUN ATF2 JUND SPI1 FOS BCL6B CLCA2 ENSG00000261737 CLCA4-AS1 SH3GLB1 piR-45012-020 CLCA4
GH01J086616 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.2 +88.0 88002 2.5 BACH1 IKZF2 TRIM22 PKNOX1 EED ARID3A DPF2 RELB RUNX3 GATAD2B ENSG00000261737 piR-48553-011 MN309174-010 CLCA4 CLCA4-AS1 SH3GLB1
GH01J086648 Enhancer 0.5 Ensembl 0.2 +57.0 56953 1.2 CEBPB FOS FOSL1 BHLHE40 JUN JUND ENSG00000261737 CLCA3P piR-55194-011 CLCA4-AS1 SH3GLB1 CLCA4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CLCA4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CLCA4-AS1 Gene

Genomic Locations for CLCA4-AS1 Gene
chr1:86,571,181-86,705,354
(GRCh38/hg38)
Size:
134,174 bases
Orientation:
Minus strand
chr1:87,036,864-87,158,886
(GRCh37/hg19)
Size:
122,023 bases
Orientation:
Minus strand

Genomic View for CLCA4-AS1 Gene

Genes around CLCA4-AS1 on UCSC Golden Path with GeneCards custom track
CLCA4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CLCA4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLCA4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLCA4-AS1 Gene

Proteins for CLCA4-AS1 Gene

Post-translational modifications for CLCA4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLCA4-AS1 Gene

Domains & Families for CLCA4-AS1 Gene

Gene Families for CLCA4-AS1 Gene

genes like me logo Genes that share domains with CLCA4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CLCA4-AS1 Gene

Function for CLCA4-AS1 Gene

Phenotypes From GWAS Catalog for CLCA4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLCA4-AS1 Gene

Localization for CLCA4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLCA4-AS1 Gene

Pathways & Interactions for CLCA4-AS1 Gene

PathCards logo

SuperPathways for CLCA4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CLCA4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CLCA4-AS1 Gene

Drugs & Compounds for CLCA4-AS1 Gene

No Compound Related Data Available

Transcripts for CLCA4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CLCA4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A7729C_9606 lncRNA 1520 4

HGNC: 54055,

RefSeq: NR_135837,

LncBook: HSALNT0009956,

LNCipedia: lnc-SELENOF-2:3,

URS0000005927_9606 lncRNA 522 4

Ensembl: ENST00000456587 (view in UCSC) ,

LncBook: HSALNT0009955,

LNCipedia: lnc-SELENOF-2:11,

NONCODE: NONHSAT004271.2,

URS0000DB8F66_9606 lncRNA 2402 1

Ensembl: ENST00000650379 (view in UCSC) ,

URS0000A76B68_9606 lncRNA 996 1

RefSeq: NR_135838,

URS0000D5C5A0_9606 lncRNA 1349 2

LncBook: HSALNT0009962,

LNCipedia: lnc-SELENOF-2:7,

CLCA4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CLCA4-AS1 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CLCA4-AS1 Gene

No ASD Table

Relevant External Links for CLCA4-AS1 Gene

GeneLoc Exon Structure for
CLCA4-AS1

Expression for CLCA4-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLCA4-AS1 Gene

Orthologs for CLCA4-AS1 Gene

Evolution for CLCA4-AS1 Gene

ENSEMBL:
Gene Tree for CLCA4-AS1 (if available)
TreeFam:
Gene Tree for CLCA4-AS1 (if available)

No data available for Orthologs for CLCA4-AS1 Gene

Paralogs for CLCA4-AS1 Gene

No data available for Paralogs for CLCA4-AS1 Gene

Variants for CLCA4-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CLCA4-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
788077 Benign: not provided 86,574,546(-) A/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for CLCA4-AS1 Gene

Additional Variant Information for CLCA4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLCA4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLCA4-AS1 Gene

Disorders for CLCA4-AS1 Gene

Additional Disease Information for CLCA4-AS1

No disorders were found for CLCA4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLCA4-AS1 Gene

Publications for CLCA4-AS1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for CLCA4-AS1 Gene

Products for CLCA4-AS1 Gene

Sources for CLCA4-AS1 Gene