CLCA4-AS1 Gene (RNA Gene)

CLCA4 Antisense RNA 1

GC01M086574
GIFtS:
9

Aliases for CLCA4-AS1 Gene

Subcategory (RNA class) for CLCA4-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for CLCA4-AS1 Gene

  • CLCA4 Antisense RNA 1 2 3 5
  • NONHSAG001983 94
  • Lnc-SELENOF-2 170
  • HSALNG0004920 169

External Ids for CLCA4-AS1 Gene

Previous GeneCards Identifiers for CLCA4-AS1 Gene

  • GC01M086705

Summaries for CLCA4-AS1 Gene

GeneCards Summary for CLCA4-AS1 Gene

CLCA4-AS1 (CLCA4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CLCA4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CLCA4-AS1 Gene

Genomics for CLCA4-AS1 Gene

GeneHancer (GH) Regulatory Elements for CLCA4-AS1 Gene

Promoters and enhancers for CLCA4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J086703 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -1.0 -1030 5.2 ZNF24 SP1 CTCF RBPJ POLR2A CREB1 ZNF362 MYC NFYC ELF1 SH3GLB1 ENSG00000261737 CLCA4-AS1 ODF2L piR-56480-003
GH01J086482 Enhancer 0.4 Ensembl 10 +222.3 222253 0.6 ATF7 CREB1 ATF2 CBFA2T3 CLCA2 CLCA4-AS1 ODF2L CLCA1 lnc-ODF2L-1
GH01J086695 Enhancer 0.5 Ensembl 0.4 +8.4 8353 2.8 BCL6B JUN JUND FOXA2 FOXA1 FOS ATF2 CLCA2 ENSG00000261737 CLCA4-AS1 piR-45012-020
GH01J086616 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.2 +87.4 87402 2.5 ETV6 CREM ZBED1 IKZF1 BACH1 TRIM22 IKZF2 PKNOX1 EED DPF2 ENSG00000261737 piR-48553-011 piR-39279-003 CLCA4-AS1
GH01J086648 Enhancer 0.4 Ensembl 0.2 +56.4 56353 1.2 FOS FOSL1 JUN JUND ENSG00000261737 CLCA3P piR-55194-011 CLCA4-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CLCA4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CLCA4-AS1 Gene

Genomic Locations for CLCA4-AS1 Gene
chr1:86,571,181-86,704,754
(GRCh38/hg38)
Size:
133,574 bases
Orientation:
Minus strand
chr1:87,036,864-87,158,886
(GRCh37/hg19)
Size:
122,023 bases
Orientation:
Minus strand

Genomic View for CLCA4-AS1 Gene

Genes around CLCA4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLCA4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLCA4-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CLCA4-AS1 Gene

Proteins for CLCA4-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for CLCA4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLCA4-AS1 Gene

Domains & Families for CLCA4-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CLCA4-AS1 Gene

Function for CLCA4-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for CLCA4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLCA4-AS1 Gene

Localization for CLCA4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLCA4-AS1 Gene

Pathways & Interactions for CLCA4-AS1 Gene

PathCards logo

SuperPathways for CLCA4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CLCA4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLCA4-AS1 Gene

Drugs & Compounds for CLCA4-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CLCA4-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for CLCA4-AS1 Gene

(2) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(14) RNACentral transcripts :
(10) LNCipedia transcripts :
(3) NONCODE transcripts :
(4) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CLCA4-AS1 Gene

No ASD Table

Relevant External Links for CLCA4-AS1 Gene

GeneLoc Exon Structure for
CLCA4-AS1
ECgene alternative splicing isoforms for
CLCA4-AS1

Expression for CLCA4-AS1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLCA4-AS1 Gene

Orthologs for CLCA4-AS1 Gene

Evolution for CLCA4-AS1 Gene

ENSEMBL:
Gene Tree for CLCA4-AS1 (if available)
TreeFam:
Gene Tree for CLCA4-AS1 (if available)

No data available for Orthologs for CLCA4-AS1 Gene

Paralogs for CLCA4-AS1 Gene

No data available for Paralogs for CLCA4-AS1 Gene

Variants for CLCA4-AS1 Gene

Sequence variations from dbSNP and Humsavar for CLCA4-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000030739 -- 86,620,340(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000031931 -- 86,690,653(-) T/A genic_downstream_transcript_variant, intron_variant
rs1000033069 -- 86,705,504(-) G/C upstream_transcript_variant
rs1000043848 -- 86,628,771(-) C/A genic_downstream_transcript_variant, intron_variant
rs1000064671 -- 86,572,631(-) G/A genic_downstream_transcript_variant, intron_variant

Additional Variant Information for CLCA4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLCA4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CLCA4-AS1 Gene

Disorders for CLCA4-AS1 Gene

No disorders were found for CLCA4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CLCA4-AS1 Gene

Publications for CLCA4-AS1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for CLCA4-AS1 Gene

Products for CLCA4-AS1 Gene

Sources for CLCA4-AS1 Gene