Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CKMT2-AS1 Gene

Subcategory (RNA class) for CKMT2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CKMT2-AS1 Gene

  • CKMT2 Antisense RNA 1 2 3 5
  • CTC-281B15.1 3

External Ids for CKMT2-AS1 Gene

Previous GeneCards Identifiers for CKMT2-AS1 Gene

  • GC05M080501

Summaries for CKMT2-AS1 Gene

GeneCards Summary for CKMT2-AS1 Gene

CKMT2-AS1 (CKMT2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CKMT2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CKMT2-AS1 Gene

Genomics for CKMT2-AS1 Gene

GeneHancer (GH) Regulatory Elements for CKMT2-AS1 Gene

Promoters and enhancers for CKMT2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J081300 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 696.3 -1.1 -1109 4.7 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B E2F8 CKMT2-AS1 ZCCHC9 ENSG00000248794 GC05M081320
GH05J081299 Enhancer 0.7 ENCODE 650.7 +1.8 1840 0.9 CTCF PKNOX1 SAP130 ARID4B SIN3A ZNF2 RAD21 RFX5 ZNF664 GATA3 CKMT2-AS1 ZCCHC9 ENSG00000248794
GH05J081231 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 38.4 +67.6 67579 4.8 DRAP1 ESRRA SAP130 ZIC2 ZFHX2 GLIS2 ZNF316 POLR2A IKZF5 SCRT2 CKMT2 GC05M081226 CKMT2-AS1 ENSG00000248794 ENSG00000249772 GC05P081229
GH05J080487 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 15.9 +812.6 812615 3.7 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF213 SP3 NFYC MXD4 FAM151B LOC105379049 ZCCHC9 TENT2 CKMT2-AS1 MTX3 ZFYVE16 DHFR RPS27AP9
GH05J081244 Enhancer 0.9 Ensembl ENCODE dbSUPER 34.3 +55.2 55166 4.3 JUND ZNF189 HLF FOS CKMT2-AS1 ENSG00000248794 CKMT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CKMT2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CKMT2-AS1 Gene

Genomic Locations for CKMT2-AS1 Gene
chr5:81,204,084-81,301,569
(GRCh38/hg38)
Size:
97,486 bases
Orientation:
Minus strand
chr5:80,499,903-80,597,388
(GRCh37/hg19)

Genomic View for CKMT2-AS1 Gene

Genes around CKMT2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CKMT2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CKMT2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CKMT2-AS1 Gene

Proteins for CKMT2-AS1 Gene

Post-translational modifications for CKMT2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CKMT2-AS1 Gene

Domains & Families for CKMT2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CKMT2-AS1 Gene

Function for CKMT2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CKMT2-AS1 Gene

Localization for CKMT2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CKMT2-AS1 Gene

Pathways & Interactions for CKMT2-AS1 Gene

SuperPathways for CKMT2-AS1 Gene

No Data Available

Interacting Proteins for CKMT2-AS1 Gene

Gene Ontology (GO) - Biological Process for CKMT2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CKMT2-AS1 Gene

Drugs & Compounds for CKMT2-AS1 Gene

No Compound Related Data Available

Transcripts for CKMT2-AS1 Gene

mRNA/cDNA for CKMT2-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(10) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CKMT2-AS1 Gene

No ASD Table

Relevant External Links for CKMT2-AS1 Gene

GeneLoc Exon Structure for
CKMT2-AS1
ECgene alternative splicing isoforms for
CKMT2-AS1

Expression for CKMT2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CKMT2-AS1 Gene

genes like me logo Genes that share expression patterns with CKMT2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CKMT2-AS1 Gene

Orthologs for CKMT2-AS1 Gene

Evolution for CKMT2-AS1 Gene

ENSEMBL:
Gene Tree for CKMT2-AS1 (if available)
TreeFam:
Gene Tree for CKMT2-AS1 (if available)

No data available for Orthologs for CKMT2-AS1 Gene

Paralogs for CKMT2-AS1 Gene

No data available for Paralogs for CKMT2-AS1 Gene

Variants for CKMT2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CKMT2-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000001398 -- 81,287,198(-) A/G intron_variant
rs1000015022 -- 81,301,671(-) G/A upstream_transcript_variant
rs1000167930 -- 81,276,925(-) G/T intron_variant
rs1000170391 -- 81,289,757(-) G/T intron_variant
rs1000196565 -- 81,237,511(-) A/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CKMT2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1621e212 CNV loss 25503493
esv2763877 CNV loss 21179565
esv3605591 CNV loss 21293372
esv3890664 CNV gain 25118596
nsv1073469 CNV deletion 25765185
nsv598750 CNV gain 21841781
nsv819322 CNV loss 19587683
nsv964904 CNV duplication 23825009

Additional Variant Information for CKMT2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CKMT2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CKMT2-AS1 Gene

Disorders for CKMT2-AS1 Gene

Additional Disease Information for CKMT2-AS1

No disorders were found for CKMT2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CKMT2-AS1 Gene

Publications for CKMT2-AS1 Gene

  1. Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation. (PMID: 28839111) Soibam B (RNA (New York, N.Y.) 2017) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for CKMT2-AS1 Gene

Sources for CKMT2-AS1 Gene

Content
Loading form....