Aliases for CISTR Gene

Subcategory (RNA class) for CISTR Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CISTR Gene

  • Chondrogenesis-Associated Transcript 2 3 5
  • CISTR 2 5 165
  • Cis- And Trans-Chromosomal Chondrogenic Regulator Transcript 2 3
  • CISTR-ACT 2 3
  • CISTRACT 2 3
  • Re52431 2 3
  • Chondrogenic Regulator LncRNA 3
  • NONHSAG011257.2 91
  • HSALNG0091306 164

External Ids for CISTR Gene

Previous GeneCards Identifiers for CISTR Gene

  • GC12M054146

Summaries for CISTR Gene

GeneCards Summary for CISTR Gene

CISTR (Chondrogenesis-Associated Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CISTR include Brachydactyly, Type A3 and Hypertension And Brachydactyly Syndrome.

Additional gene information for CISTR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CISTR Gene

Genomics for CISTR Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CISTR Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CISTR on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CISTR Gene

Genomic Locations for CISTR Gene
chr12:53,732,055-53,757,227
(GRCh38/hg38)
Size:
25,173 bases
Orientation:
Minus strand
chr12:54,144,231-54,145,619
(GRCh37/hg19)
Size:
1,389 bases
Orientation:
Minus strand

Genomic View for CISTR Gene

Genes around CISTR on UCSC Golden Path with GeneCards custom track
CISTR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CISTR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CISTR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CISTR Gene

Proteins for CISTR Gene

No data available for DME Specific Peptides for CISTR Gene

Domains & Families for CISTR Gene

Gene Families for CISTR Gene

genes like me logo Genes that share domains with CISTR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CISTR Gene

Function for CISTR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CISTR Gene

Localization for CISTR Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CISTR gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CISTR Gene

Pathways & Interactions for CISTR Gene

PathCards logo

SuperPathways for CISTR Gene

No Data Available

Gene Ontology (GO) - Biological Process for CISTR Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CISTR Gene

Drugs & Compounds for CISTR Gene

No Compound Related Data Available

Transcripts for CISTR Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CISTR Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075EA90_9606 lncRNA 856 5

HGNC: 49426,

RefSeq: NR_104332,

LncBook: HSALNT0189394,

LNCipedia: CISTR:1,

NONCODE: NONHSAT163576.1,

URS000025106E_9606 lncRNA 581 3

RefSeq: NR_104333,

LncBook: HSALNT0189395,

LNCipedia: CISTR:6,

URS0000811EE3_9606 lncRNA 464 3

Ensembl: ENST00000626733 (view in UCSC) ,

LncBook: HSALNT0189397,

LNCipedia: CISTR:2,

URS0000EEC033_9606 lncRNA 1566 1

Ensembl: ENST00000669269 (view in UCSC) ,

URS0000EF2F4E_9606 lncRNA 1390 1

Ensembl: ENST00000663667 (view in UCSC) ,

CISTR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CISTR Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CISTR Gene

No ASD Table

Relevant External Links for CISTR Gene

GeneLoc Exon Structure for
CISTR

Expression for CISTR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CISTR Gene

mRNA differential expression in normal tissues according to GTEx for CISTR Gene

This gene is overexpressed in Heart - Left Ventricle (x9.7) and Heart - Atrial Appendage (x9.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CISTR

genes like me logo Genes that share expression patterns with CISTR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CISTR Gene

Orthologs for CISTR Gene

Evolution for CISTR Gene

ENSEMBL:
Gene Tree for CISTR (if available)
TreeFam:
Gene Tree for CISTR (if available)

No data available for Orthologs for CISTR Gene

Paralogs for CISTR Gene

No data available for Paralogs for CISTR Gene

Variants for CISTR Gene

Additional dbSNP identifiers (rs#s) for CISTR Gene

Structural Variations from Database of Genomic Variants (DGV) for CISTR Gene

Variant ID Type Subtype PubMed ID
esv3302703 CNV tandem duplication 20981092
nsv1116700 CNV tandem duplication 24896259
nsv1125184 CNV insertion 24896259

Additional Variant Information for CISTR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CISTR

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CISTR Gene

Disorders for CISTR Gene

MalaCards: The human disease database

(5) MalaCards diseases for CISTR Gene - From: DISEASES and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search CISTR in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with CISTR: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CISTR Gene

Publications for CISTR Gene

  1. A misplaced lncRNA causes brachydactyly in humans. (PMID: 23093776) Maass PG … Bähring S (The Journal of clinical investigation 2012) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for CISTR Gene

Sources for CISTR Gene