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Aliases for CISTR Gene

Subcategory (RNA class) for CISTR Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CISTR Gene

  • Chondrogenesis-Associated Transcript 2 3 5
  • Cis- And Trans-Chromosomal Chondrogenic Regulator Transcript 2 3
  • Chondrogenic Regulator LncRNA 3
  • Re52431 3

External Ids for CISTR Gene

Previous GeneCards Identifiers for CISTR Gene

  • GC12M054146

Summaries for CISTR Gene

GeneCards Summary for CISTR Gene

CISTR (Chondrogenesis-Associated Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CISTR Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CISTR Gene

Genomics for CISTR Gene

GeneHancer (GH) Regulatory Elements for CISTR Gene

Promoters and enhancers for CISTR Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J053756 Enhancer 1 Ensembl ENCODE 650.7 -0.1 -115 1.3 HDGF ELF3 PKNOX1 ZSCAN4 SIN3A BMI1 RAD21 ZNF335 ZNF121 ZNF366 CISTR PCBP2 SP1 ENSG00000258344 CALCOCO1 AAAS HNRNPA1 ATF7 MIR196A2 LOC100652999
GH12J053755 Enhancer 0.8 FANTOM5 ENCODE 650.7 +1.1 1090 0.5 CTCF ZNF687 PKNOX1 NANOG ZNF143 PRDM10 ZIC2 ETS1 LOC105378250 CISTR PCBP2 ATP5MC2 HOXC11 HOXC13
GH12J053757 Enhancer 0.6 ENCODE 650.7 +1.7 1742 0.2 ZBTB6 ZSCAN4 MAX MZF1 ZNF2 ZNF121 ZNF335 BCL11A ZNF366 ZNF692 LOC105378250 CISTR
GH12J053768 Enhancer 0.6 ENCODE 4.9 -13.4 -13422 3.3 JUN EP300 SP1 JUND POLR2A FOS FOSL2 ZBTB12 PRDM4 GC12M053768 HOXC-AS3 HOXC10 HOXC6 MIR196A2 HOXC5 HOXC-AS1 HOXC-AS2 HOXC9 HOXC8
GH12J053753 Enhancer 0.9 FANTOM5 ENCODE 0.7 +2.8 2755 1.2 HDGF ZSCAN4 MZF1 ZNF2 ZNF366 POLR2A ZNF687 STAT1 GFI1B ZFP69B LOC105378250 ATP5MC2 HOXC4 ESPL1 CISTR CALCOCO1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CISTR on UCSC Golden Path with GeneCards custom track

Genomic Locations for CISTR Gene

Genomic Locations for CISTR Gene
6,588 bases
Minus strand

Genomic View for CISTR Gene

Genes around CISTR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CISTR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CISTR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CISTR Gene

Proteins for CISTR Gene

Post-translational modifications for CISTR Gene

No Post-translational modifications

No data available for DME Specific Peptides for CISTR Gene

Domains & Families for CISTR Gene

Gene Families for CISTR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CISTR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CISTR Gene

Function for CISTR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CISTR Gene

Localization for CISTR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CISTR Gene

Pathways & Interactions for CISTR Gene

SuperPathways for CISTR Gene

No Data Available

Interacting Proteins for CISTR Gene

Gene Ontology (GO) - Biological Process for CISTR Gene


No data available for Pathways by source and SIGNOR curated interactions for CISTR Gene

Drugs & Compounds for CISTR Gene

No Compound Related Data Available

Transcripts for CISTR Gene

mRNA/cDNA for CISTR Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CISTR Gene

No ASD Table

Relevant External Links for CISTR Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CISTR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CISTR Gene

mRNA differential expression in normal tissues according to GTEx for CISTR Gene

This gene is overexpressed in Heart - Left Ventricle (x9.7) and Heart - Atrial Appendage (x9.1).

NURSA nuclear receptor signaling pathways regulating expression of CISTR Gene:

genes like me logo Genes that share expression patterns with CISTR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CISTR Gene

Orthologs for CISTR Gene

Evolution for CISTR Gene

Gene Tree for CISTR (if available)
Gene Tree for CISTR (if available)

No data available for Orthologs for CISTR Gene

Paralogs for CISTR Gene

No data available for Paralogs for CISTR Gene

Variants for CISTR Gene

Sequence variations from dbSNP and Humsavar for CISTR Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000372071 -- 53,753,216(-) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000574879 -- 53,753,747(-) C/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000983381 -- 53,751,563(-) A/C intron_variant
rs1001092208 -- 53,758,470(-) T/C upstream_transcript_variant
rs1001294295 -- 53,758,690(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CISTR Gene

Variant ID Type Subtype PubMed ID
esv3302703 CNV tandem duplication 20981092
nsv1116700 CNV tandem duplication 24896259
nsv1125184 CNV insertion 24896259

Additional Variant Information for CISTR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CISTR Gene

Disorders for CISTR Gene

Additional Disease Information for CISTR

No disorders were found for CISTR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CISTR Gene

Publications for CISTR Gene

  1. A misplaced lncRNA causes brachydactyly in humans. (PMID: 23093776) Maass PG … Bähring S (The Journal of clinical investigation 2012) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for CISTR Gene

Sources for CISTR Gene

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