Aliases for CIRBP-AS1 Gene

Subcategory (RNA class) for CIRBP-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CIRBP-AS1 Gene

  • CIRBP Antisense RNA 1 2 3 4 5
  • CIRBP-AS1 2 5 165
  • CIRBP Antisense RNA 1 (Non-Protein Coding) 2 3
  • C19orf23 3 4
  • Putative Uncharacterized Protein CIRBP-AS1 4
  • Chromosome 19 Open Reading Frame 23 2
  • CIRBP Antisense Gene Protein 1 4
  • NONHSAG024350.2 91
  • HSALNG0123001 164
  • MGC39338 2

External Ids for CIRBP-AS1 Gene

Previous HGNC Symbols for CIRBP-AS1 Gene

  • C19orf23

Summaries for CIRBP-AS1 Gene

GeneCards Summary for CIRBP-AS1 Gene

CIRBP-AS1 (CIRBP Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CIRBP-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CIRBP-AS1 Gene

Genomics for CIRBP-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CIRBP-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CIRBP-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CIRBP-AS1 Gene

Genomic Locations for CIRBP-AS1 Gene
chr19:1,267,471-1,270,260
(GRCh38/hg38)
Size:
2,790 bases
Orientation:
Minus strand
chr19:1,267,470-1,270,259
(GRCh37/hg19)
Size:
2,790 bases
Orientation:
Minus strand

Genomic View for CIRBP-AS1 Gene

Genes around CIRBP-AS1 on UCSC Golden Path with GeneCards custom track
CIRBP-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CIRBP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CIRBP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CIRBP-AS1 Gene

Proteins for CIRBP-AS1 Gene

  • Protein details for CIRBP-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TBR5-CSAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein CIRBP-AS1
    Protein Accession:
    Q8TBR5

    Protein attributes for CIRBP-AS1 Gene

    Size:
    109 amino acids
    Molecular mass:
    12399 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CIRBP-AS1 Gene

Post-translational modifications for CIRBP-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CIRBP-AS1 Gene

Domains & Families for CIRBP-AS1 Gene

Gene Families for CIRBP-AS1 Gene

Protein Domains for CIRBP-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with CIRBP-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CIRBP-AS1 Gene

Function for CIRBP-AS1 Gene

Phenotypes From GWAS Catalog for CIRBP-AS1 Gene

genes like me logo Genes that share phenotypes with CIRBP-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CIRBP-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CIRBP-AS1 Gene

Localization for CIRBP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CIRBP-AS1 Gene

Pathways & Interactions for CIRBP-AS1 Gene

PathCards logo

SuperPathways for CIRBP-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CIRBP-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CIRBP-AS1 Gene

Drugs & Compounds for CIRBP-AS1 Gene

No Compound Related Data Available

Transcripts for CIRBP-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CIRBP-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BC34A_9606 lncRNA 1356 4

Ensembl: ENST00000585832 (view in UCSC) ,

LncBook: HSALNT0254200,

LNCipedia: CIRBP-AS1:1,

NONCODE: NONHSAT060248.2,

URS000075D59F_9606 lncRNA 1356 2

HGNC: 28588,

RefSeq: NR_027271,

URS00007720B5_9606 lncRNA 994 2

LncBook: HSALNT0254201,

LNCipedia: CIRBP-AS1:3,

URS00008BB32B_9606 lncRNA 318 2

LNCipedia: CIRBP-AS1:4,

NONCODE: NONHSAT060252.2,

URS000012DA60_9606 lncRNA 642 1

LNCipedia: CIRBP-AS1:2,

CIRBP-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CIRBP-AS1 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CIRBP-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for CIRBP-AS1 Gene

No ASD Table

Relevant External Links for CIRBP-AS1 Gene

GeneLoc Exon Structure for
CIRBP-AS1

Expression for CIRBP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CIRBP-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CIRBP-AS1

SOURCE GeneReport for Unigene cluster for CIRBP-AS1 Gene:

Hs.438829
genes like me logo Genes that share expression patterns with CIRBP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CIRBP-AS1 Gene

Orthologs for CIRBP-AS1 Gene

Evolution for CIRBP-AS1 Gene

ENSEMBL:
Gene Tree for CIRBP-AS1 (if available)
TreeFam:
Gene Tree for CIRBP-AS1 (if available)

No data available for Orthologs for CIRBP-AS1 Gene

Paralogs for CIRBP-AS1 Gene

No data available for Paralogs for CIRBP-AS1 Gene

Variants for CIRBP-AS1 Gene

Additional dbSNP identifiers (rs#s) for CIRBP-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CIRBP-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv136n111 CNV deletion 26073780
esv2758743 CNV gain+loss 17122850
esv3643389 CNV gain 21293372
nsv1055164 CNV gain 25217958
nsv1058677 CNV loss 25217958
nsv1060536 CNV gain 25217958
nsv1160555 CNV deletion 26073780
nsv470103 CNV gain 18288195
nsv470104 CNV loss 18288195
nsv828368 CNV gain 20364138
nsv828371 CNV loss 20364138
nsv953941 CNV deletion 24416366
nsv9662 CNV gain 18304495

Additional Variant Information for CIRBP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CIRBP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CIRBP-AS1 Gene

Disorders for CIRBP-AS1 Gene

No disorders were found for CIRBP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CIRBP-AS1 Gene

Publications for CIRBP-AS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3
  4. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 4

Products for CIRBP-AS1 Gene

Sources for CIRBP-AS1 Gene