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Aliases for CIDECP Gene

Aliases for CIDECP Gene

  • Cell Death-Inducing DFFA-Like Effector C Pseudogene 2 3 5
  • Cell Death-Inducing CIDE-Like Effector Pseudogene 3
  • CICE 3

External Ids for CIDECP Gene

Previous GeneCards Identifiers for CIDECP Gene

  • GC03M010033
  • GC03M010056
  • GC03M009995

Summaries for CIDECP Gene

GeneCards Summary for CIDECP Gene

CIDECP (Cell Death-Inducing DFFA-Like Effector C Pseudogene) is a Pseudogene.

Additional gene information for CIDECP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CIDECP Gene

Genomics for CIDECP Gene

GeneHancer (GH) Regulatory Elements for CIDECP Gene

Promoters and enhancers for CIDECP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J010024 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 656.6 +0.1 113 2.7 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC FANCD2 CIDECP SRGAP3-AS3 BRPF1 SETD5 GHRLOS SEC13 BRK1 ATP2B2-IT1 ENSG00000230599
GH03J009975 Enhancer 1.5 Ensembl ENCODE dbSUPER 11.5 +48.2 48152 4.8 HDGF PKNOX1 CLOCK FOXA2 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 PIR57234 BRPF1 TTLL3 SETD5 FANCD2 THUMPD3-AS1 BRK1 EMC3-AS1 PRRT3 CIDECP
GH03J009969 Enhancer 0.7 ENCODE 10.7 +55.9 55924 2.6 CLOCK CEBPG ZBTB40 CTBP1 GATA3 FOXK2 SCRT2 FOSL2 FOS SMARCE1 BRK1 FANCD2OS IL17RC RNU6-882P IL17RE FANCD2 CIDECP VHL RPUSD3 JAGN1
GH03J009994 Enhancer 0.5 Ensembl ENCODE 12.3 +32.1 32100 0.5 CEBPB FANCD2P1 BRK1 CIDECP FANCD2 RNU6-670P CYCSP10 EMC3-AS1 EMC3
GH03J009995 Enhancer 0.3 Ensembl 12.3 +31.7 31664 0.2 CEBPB FANCD2P1 BRK1 CIDECP FANCD2 RNU6-670P ENSG00000206567 CYCSP10 EMC3-AS1 EMC3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CIDECP on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the CIDECP gene promoter:

Genomic Locations for CIDECP Gene

Genomic Locations for CIDECP Gene
chr3:10,014,238-10,026,365
(GRCh38/hg38)
Size:
12,128 bases
Orientation:
Minus strand
chr3:10,055,932-10,068,049
(GRCh37/hg19)

Genomic View for CIDECP Gene

Genes around CIDECP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CIDECP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CIDECP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CIDECP Gene

Function for CIDECP Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CIDECP Gene

Localization for CIDECP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CIDECP Gene

Pathways & Interactions for CIDECP Gene

SuperPathways for CIDECP Gene

No Data Available

Interacting Proteins for CIDECP Gene

Gene Ontology (GO) - Biological Process for CIDECP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CIDECP Gene

Drugs & Compounds for CIDECP Gene

No Compound Related Data Available

Transcripts for CIDECP Gene

mRNA/cDNA for CIDECP Gene

(88) Selected AceView cDNA sequences:
(8) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CIDECP Gene

Cell death-inducing DFFA-like effector c pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CIDECP Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b
SP1: - -
SP2: -
SP3:

Relevant External Links for CIDECP Gene

GeneLoc Exon Structure for
CIDECP
ECgene alternative splicing isoforms for
CIDECP

Expression for CIDECP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CIDECP Gene

NURSA nuclear receptor signaling pathways regulating expression of CIDECP Gene:

CIDECP

SOURCE GeneReport for Unigene cluster for CIDECP Gene:

Hs.635072
genes like me logo Genes that share expression patterns with CIDECP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CIDECP Gene

Orthologs for CIDECP Gene

Evolution for CIDECP Gene

ENSEMBL:
Gene Tree for CIDECP (if available)
TreeFam:
Gene Tree for CIDECP (if available)

No data available for Orthologs for CIDECP Gene

Paralogs for CIDECP Gene

No data available for Paralogs for CIDECP Gene

Variants for CIDECP Gene

Sequence variations from dbSNP and Humsavar for CIDECP Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000234956 -- 10,017,096(-) G/A downstream_transcript_variant
rs1000292958 -- 10,023,304(-) G/A intron_variant
rs1000391424 -- 10,023,113(-) A/G intron_variant
rs1000502311 -- 10,017,410(-) T/A downstream_transcript_variant
rs1000697261 -- 10,027,722(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CIDECP Gene

Variant ID Type Subtype PubMed ID
dgv762e201 CNV deletion 23290073
esv2670751 CNV deletion 23128226
esv2724891 CNV deletion 23290073
esv2724893 CNV deletion 23290073
esv3595258 CNV loss 21293372
nsv1013567 CNV loss 25217958
nsv1073204 CNV deletion 25765185
nsv521391 CNV loss 19592680
nsv523205 CNV loss 19592680
nsv589648 CNV loss 21841781

Additional Variant Information for CIDECP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CIDECP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CIDECP Gene

Disorders for CIDECP Gene

Additional Disease Information for CIDECP

No disorders were found for CIDECP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CIDECP Gene

Publications for CIDECP Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  2. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3

Products for CIDECP Gene

Sources for CIDECP Gene

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