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Aliases for CHRM3-AS2 Gene

Subcategory (RNA class) for CHRM3-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CHRM3-AS2 Gene

  • CHRM3 Antisense RNA 2 2 3 5
  • CHRM3 Antisense RNA 2 (Non-Protein Coding) 2 3

External Ids for CHRM3-AS2 Gene

Previous GeneCards Identifiers for CHRM3-AS2 Gene

  • GC01M239869

Summaries for CHRM3-AS2 Gene

GeneCards Summary for CHRM3-AS2 Gene

CHRM3-AS2 (CHRM3 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CHRM3-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHRM3-AS2 Gene

Genomics for CHRM3-AS2 Gene

GeneHancer (GH) Regulatory Elements for CHRM3-AS2 Gene

Promoters and enhancers for CHRM3-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J239730 Enhancer 0.3 FANTOM5 650.7 -0.1 -117 0.3 CHRM3-AS2 CHRM3-AS1 CHRM3
GH01J239717 Enhancer 1 Ensembl ENCODE dbSUPER 15.2 +10.7 10675 5.3 GATA3 POLR2A MAX RCOR1 REST MYC GABPA TRIM28 CHRM3-AS2 CHRM3 GC01P239706
GH01J239856 Enhancer 0.6 ENCODE 4.8 -127.0 -127009 2.6 SMARCC1 JUN MAX CEBPB EP300 ZNF274 JUND MAFF STAT3 FOS CHRM3-AS2 CHRM3-AS1 CHRM3
GH01J239815 Enhancer 0.9 Ensembl ENCODE 0.2 -86.3 -86295 2.1 CTCF PKNOX1 JUN MAX ZBTB40 TEAD3 RCOR1 FOSL2 FOS CHD2 CHRM3-AS1 CHRM3-AS2 CHRM3
GH01J239814 Enhancer 0.9 Ensembl ENCODE 0.2 -84.1 -84106 0.9 CTCF JUN MAX BACH1 SIN3A FEZF1 RAD21 RFX5 SMC3 SMARCC2 CHRM3 CHRM3-AS2 CHRM3-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CHRM3-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CHRM3-AS2 Gene

Genomic Locations for CHRM3-AS2 Gene
chr1:239,703,381-239,730,465
(GRCh38/hg38)
Size:
27,085 bases
Orientation:
Minus strand
chr1:239,866,684-239,893,765
(GRCh37/hg19)

Genomic View for CHRM3-AS2 Gene

Genes around CHRM3-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHRM3-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHRM3-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHRM3-AS2 Gene

Proteins for CHRM3-AS2 Gene

Post-translational modifications for CHRM3-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHRM3-AS2 Gene

Domains & Families for CHRM3-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHRM3-AS2 Gene

Function for CHRM3-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHRM3-AS2 Gene

Localization for CHRM3-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHRM3-AS2 Gene

Pathways & Interactions for CHRM3-AS2 Gene

SuperPathways for CHRM3-AS2 Gene

No Data Available

Interacting Proteins for CHRM3-AS2 Gene

Gene Ontology (GO) - Biological Process for CHRM3-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CHRM3-AS2 Gene

Drugs & Compounds for CHRM3-AS2 Gene

No Compound Related Data Available

Transcripts for CHRM3-AS2 Gene

mRNA/cDNA for CHRM3-AS2 Gene

(4) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(10) RNA Central transcripts :

Unigene Clusters for CHRM3-AS2 Gene

CHRM3 antisense RNA 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CHRM3-AS2 Gene

No ASD Table

Relevant External Links for CHRM3-AS2 Gene

GeneLoc Exon Structure for
CHRM3-AS2
ECgene alternative splicing isoforms for
CHRM3-AS2

Expression for CHRM3-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CHRM3-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for CHRM3-AS2 Gene

This gene is overexpressed in Testis (x12.1), Small Intestine - Terminal Ileum (x8.1), Whole Blood (x7.8), and Spleen (x5.7).

SOURCE GeneReport for Unigene cluster for CHRM3-AS2 Gene:

Hs.667175
genes like me logo Genes that share expression patterns with CHRM3-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHRM3-AS2 Gene

Orthologs for CHRM3-AS2 Gene

Evolution for CHRM3-AS2 Gene

ENSEMBL:
Gene Tree for CHRM3-AS2 (if available)
TreeFam:
Gene Tree for CHRM3-AS2 (if available)

No data available for Orthologs for CHRM3-AS2 Gene

Paralogs for CHRM3-AS2 Gene

No data available for Paralogs for CHRM3-AS2 Gene

Variants for CHRM3-AS2 Gene

Sequence variations from dbSNP and Humsavar for CHRM3-AS2 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000489435 -- 239,717,945(-) T/C intron_variant
rs1000788612 -- 239,712,353(-) G/T intron_variant
rs1000938593 -- 239,719,254(-) G/A upstream_transcript_variant
rs1001045387 -- 239,711,744(-) C/T intron_variant
rs1001370075 -- 239,718,802(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CHRM3-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2759009 CNV gain 17122850
nsv506986 OTHER sequence alteration 20534489
nsv549435 CNV gain 21841781
nsv954002 CNV duplication 24416366

Additional Variant Information for CHRM3-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHRM3-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CHRM3-AS2 Gene

Disorders for CHRM3-AS2 Gene

Additional Disease Information for CHRM3-AS2

No disorders were found for CHRM3-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHRM3-AS2 Gene

Publications for CHRM3-AS2 Gene

No publications were found for CHRM3-AS2 Gene.

Products for CHRM3-AS2 Gene

Sources for CHRM3-AS2 Gene

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