Aliases for CHRM3-AS1 Gene

Subcategory (RNA class) for CHRM3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for CHRM3-AS1 Gene

  • CHRM3 Antisense RNA 1 2 3 5
  • CHRM3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CHRM3-AS1 2 168
  • NONHSAG004779 92
  • HSALNG0011896 167

External Ids for CHRM3-AS1 Gene

Previous GeneCards Identifiers for CHRM3-AS1 Gene

  • GC01M240062

Summaries for CHRM3-AS1 Gene

GeneCards Summary for CHRM3-AS1 Gene

CHRM3-AS1 (CHRM3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CHRM3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CHRM3-AS1 Gene

Genomics for CHRM3-AS1 Gene

GeneHancer (GH) Regulatory Elements for CHRM3-AS1 Gene

Promoters and enhancers for CHRM3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J239897 Enhancer 0.7 ENCODE 500.7 +1.6 1577 0.2 CTCF ZNF10 REST RAD21 TRIM22 SMC3 ZBTB17 YY1 ATF3 GTF2F1 CHRM3-AS1 piR-42002-001 CHRM3
GH01J239815 Enhancer 0.7 ENCODE 12.7 +83.1 83113 2.1 TCF12 JUND EP300 DEK FOS FOSL2 CEBPB CHD2 JUN RCOR1 CHRM3-AS1 piR-42002-001 CHRM3-AS2 CHRM3 lnc-CHRM3-1
GH01J239878 Enhancer 0.6 Ensembl 12.4 +20.5 20472 1.6 CUX1 CTBP1 MXI1 FOS GATA3 PKNOX1 DPF2 RCOR1 NR3C1 SMARCE1 CHRM3-AS1 piR-42002-001 CHRM3 lnc-CHRM3-1
GH01J239308 Enhancer 0.4 Ensembl 11.9 +590.8 590830 0.7 CTCF USF1 ZNF654 RAD21 CHRM3-AS1 CHRM3 lnc-GREM2-7 HSALNG0011878
GH01J239930 Enhancer 0.4 ENCODE 12.5 -31.3 -31295 1.8 FOS SMARCA4 ATF2 CHRM3-AS1 ENSG00000228818 ENSG00000231979 LOC105373224
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CHRM3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CHRM3-AS1 Gene

Genomic Locations for CHRM3-AS1 Gene
chr1:239,898,016-239,899,873
(GRCh38/hg38)
Size:
1,858 bases
Orientation:
Minus strand
chr1:240,061,316-240,063,172
(GRCh37/hg19)
Size:
1,857 bases
Orientation:
Minus strand

Genomic View for CHRM3-AS1 Gene

Genes around CHRM3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHRM3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHRM3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHRM3-AS1 Gene

Proteins for CHRM3-AS1 Gene

Post-translational modifications for CHRM3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHRM3-AS1 Gene

Domains & Families for CHRM3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CHRM3-AS1 Gene

Function for CHRM3-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHRM3-AS1 Gene

Localization for CHRM3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHRM3-AS1 Gene

Pathways & Interactions for CHRM3-AS1 Gene

PathCards logo

SuperPathways for CHRM3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CHRM3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CHRM3-AS1 Gene

Drugs & Compounds for CHRM3-AS1 Gene

No Compound Related Data Available

Transcripts for CHRM3-AS1 Gene

mRNA/cDNA for CHRM3-AS1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CHRM3-AS1 Gene

No ASD Table

Relevant External Links for CHRM3-AS1 Gene

GeneLoc Exon Structure for
CHRM3-AS1

Expression for CHRM3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CHRM3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CHRM3-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x22.0) and Pancreas (x6.4).
genes like me logo Genes that share expression patterns with CHRM3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHRM3-AS1 Gene

Orthologs for CHRM3-AS1 Gene

Evolution for CHRM3-AS1 Gene

ENSEMBL:
Gene Tree for CHRM3-AS1 (if available)
TreeFam:
Gene Tree for CHRM3-AS1 (if available)

No data available for Orthologs for CHRM3-AS1 Gene

Paralogs for CHRM3-AS1 Gene

No data available for Paralogs for CHRM3-AS1 Gene

Variants for CHRM3-AS1 Gene

Additional dbSNP identifiers (rs#s) for CHRM3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CHRM3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv81e214 CNV gain 21293372
esv2759009 CNV gain 17122850
esv35011 CNV gain 17911159
esv3589285 CNV gain 21293372
esv3891259 CNV gain 25118596
nsv519393 CNV gain 19592680
nsv827531 CNV gain 20364138

Additional Variant Information for CHRM3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHRM3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CHRM3-AS1 Gene

Disorders for CHRM3-AS1 Gene

Additional Disease Information for CHRM3-AS1

No disorders were found for CHRM3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHRM3-AS1 Gene

Publications for CHRM3-AS1 Gene

No publications were found for CHRM3-AS1 Gene.

No data available for Mastermind for CHRM3-AS1 Gene

Products for CHRM3-AS1 Gene

Sources for CHRM3-AS1 Gene