CHORDC1P4 Gene (Pseudogene)

CHORDC1 Pseudogene 4

GC18M002944
GIFtS:
6
See more...

Aliases for CHORDC1P4 Gene

Aliases for CHORDC1P4 Gene

  • CHORDC1 Pseudogene 4 2 3 5
  • Cysteine And Histidine-Rich Domain (CHORD) Containing 1 Pseudogene 3
  • Cysteine And Histidine Rich Domain Containing 1 Pseudogene 3
  • CHORDC1P4 5

External Ids for CHORDC1P4 Gene

Summaries for CHORDC1P4 Gene

GeneCards Summary for CHORDC1P4 Gene

CHORDC1P4 (CHORDC1 Pseudogene 4) is a Pseudogene.

Additional gene information for CHORDC1P4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CHORDC1P4 Gene

Genomics for CHORDC1P4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for CHORDC1P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J002938 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +7.0 7001 2.9 GATAD2A REST TFE3 RXRB IRF2 SP1 CEBPA SOX13 ZBTB26 FOXA2 LPIN2 CHORDC1P4 lnc-MYOM1-6 ENSG00000272625 EMILIN2
GH18J002931 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +14.1 14132 1.9 CTCF REST RAD21 TRIM22 SMARCC2 ZNF316 BCLAF1 USF1 SMC3 RBM22 LPIN2 EMILIN2 MYOM1 CHORDC1P4 ENSG00000272625 lnc-MYOM1-6
GH18J002934 Enhancer 0.4 Ensembl dbSUPER 0.4 +11.0 10989 0.2 SCRT2 CHORDC1P4 ENSG00000272625 lnc-MYOM1-6 LPIN2 EMILIN2
GH18J002922 Enhancer 0.3 Ensembl 0.4 +23.4 23389 1.4 JUN EMILIN2 ENSG00000252258 MYOM1 MYL12B LPIN2 ENSG00000272625 CHORDC1P4 lnc-MYOM1-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CHORDC1P4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CHORDC1P4 Gene

Genomic Locations for CHORDC1P4 Gene
chr18:2,943,212-2,946,890
(GRCh38/hg38)
Size:
3,679 bases
Orientation:
Minus strand
chr18:2,943,210-2,946,888
(GRCh37/hg19)
Size:
3,679 bases
Orientation:
Minus strand

Genomic View for CHORDC1P4 Gene

Genes around CHORDC1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHORDC1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHORDC1P4 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CHORDC1P4 Gene

Proteins for CHORDC1P4 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for CHORDC1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHORDC1P4 Gene

Domains & Families for CHORDC1P4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CHORDC1P4 Gene

Function for CHORDC1P4 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for CHORDC1P4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHORDC1P4 Gene

Localization for CHORDC1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHORDC1P4 Gene

Pathways & Interactions for CHORDC1P4 Gene

PathCards logo

SuperPathways for CHORDC1P4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CHORDC1P4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CHORDC1P4 Gene

Drugs & Compounds for CHORDC1P4 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CHORDC1P4 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for CHORDC1P4 Gene

1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CHORDC1P4 Gene

No ASD Table

Relevant External Links for CHORDC1P4 Gene

GeneLoc Exon Structure for
CHORDC1P4

Expression for CHORDC1P4 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CHORDC1P4

SOURCE GeneReport for Unigene cluster for CHORDC1P4 Gene:

Hs.673126
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHORDC1P4 Gene

Orthologs for CHORDC1P4 Gene

Evolution for CHORDC1P4 Gene

ENSEMBL:
Gene Tree for CHORDC1P4 (if available)
TreeFam:
Gene Tree for CHORDC1P4 (if available)

No data available for Orthologs for CHORDC1P4 Gene

Paralogs for CHORDC1P4 Gene

No data available for Paralogs for CHORDC1P4 Gene

Variants for CHORDC1P4 Gene

Structural Variations from Database of Genomic Variants (DGV) for CHORDC1P4 Gene

Variant ID Type Subtype PubMed ID
nsv1062247 CNV gain 25217958
nsv2189 CNV deletion 18451855
nsv576251 CNV gain 21841781
nsv960645 CNV duplication 23825009

Additional Variant Information for CHORDC1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHORDC1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for CHORDC1P4 Gene

Disorders for CHORDC1P4 Gene

No disorders were found for CHORDC1P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CHORDC1P4 Gene

Publications for CHORDC1P4 Gene

  1. PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. (PMID: 31091453) Shami Shah A … Baskin JM (Cell reports 2019) 3
  2. Genome-wide association study of body mass index in 23 000 individuals with and without asthma. (PMID: 23517042) Melén E … Lasky-Su J (Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology 2013) 3
  3. Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia. (PMID: 21490949) Sim X … Tai ES (PLoS genetics 2011) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for CHORDC1P4 Gene

Products for CHORDC1P4 Gene

Sources for CHORDC1P4 Gene