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Aliases for CHODL-AS1 Gene

Subcategory (RNA class) for CHODL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CHODL-AS1 Gene

  • CHODL Antisense RNA 1 2 3 5
  • CHODL Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 21 Open Reading Frame 39 2
  • Non-Protein Coding RNA 157 2
  • NCRNA00157 3
  • C21orf39 3

External Ids for CHODL-AS1 Gene

Previous HGNC Symbols for CHODL-AS1 Gene

  • C21orf39
  • NCRNA00157

Previous GeneCards Identifiers for CHODL-AS1 Gene

  • GC21M019208

Summaries for CHODL-AS1 Gene

GeneCards Summary for CHODL-AS1 Gene

CHODL-AS1 (CHODL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CHODL-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHODL-AS1 Gene

Genomics for CHODL-AS1 Gene

GeneHancer (GH) Regulatory Elements for CHODL-AS1 Gene

Promoters and enhancers for CHODL-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J017847 Enhancer 1 FANTOM5 ENCODE 12 +37.0 37049 1.6 PKNOX1 JUN STAT5A BATF IRF4 FOSL1 NFATC1 EED ATF7 ETV6 CHODL CHODL-AS1 RPL37P3 C21orf91-OT1 ENSG00000244676
GH21J017827 Enhancer 0.3 ENCODE 11.9 +57.4 57354 1 YY1 CHODL-AS1 RPL37P3 CHODL
GH21J017829 Enhancer 0.2 ENCODE 11.9 +55.9 55890 0.7 CHODL-AS1 RPL37P3 CHODL
GH21J017672 Enhancer 0.2 ENCODE 11.6 +212.2 212233 1.3 CHODL CHODL-AS1 RPL37P3 ENSG00000226956 GC21M017663
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CHODL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CHODL-AS1 Gene

Genomic Locations for CHODL-AS1 Gene
chr21:17,835,016-17,885,608
(GRCh38/hg38)
Size:
50,593 bases
Orientation:
Minus strand
chr21:19,207,333-19,257,925
(GRCh37/hg19)

Genomic View for CHODL-AS1 Gene

Genes around CHODL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHODL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHODL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHODL-AS1 Gene

Proteins for CHODL-AS1 Gene

Post-translational modifications for CHODL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHODL-AS1 Gene

Domains & Families for CHODL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHODL-AS1 Gene

Function for CHODL-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHODL-AS1 Gene

Localization for CHODL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHODL-AS1 Gene

Pathways & Interactions for CHODL-AS1 Gene

SuperPathways for CHODL-AS1 Gene

No Data Available

Interacting Proteins for CHODL-AS1 Gene

Gene Ontology (GO) - Biological Process for CHODL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CHODL-AS1 Gene

Drugs & Compounds for CHODL-AS1 Gene

No Compound Related Data Available

Transcripts for CHODL-AS1 Gene

mRNA/cDNA for CHODL-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for CHODL-AS1 Gene

CHODL antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CHODL-AS1 Gene

No ASD Table

Relevant External Links for CHODL-AS1 Gene

GeneLoc Exon Structure for
CHODL-AS1
ECgene alternative splicing isoforms for
CHODL-AS1

Expression for CHODL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CHODL-AS1 Gene

SOURCE GeneReport for Unigene cluster for CHODL-AS1 Gene:

Hs.404306
genes like me logo Genes that share expression patterns with CHODL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHODL-AS1 Gene

Orthologs for CHODL-AS1 Gene

Evolution for CHODL-AS1 Gene

ENSEMBL:
Gene Tree for CHODL-AS1 (if available)
TreeFam:
Gene Tree for CHODL-AS1 (if available)

No data available for Orthologs for CHODL-AS1 Gene

Paralogs for CHODL-AS1 Gene

No data available for Paralogs for CHODL-AS1 Gene

Variants for CHODL-AS1 Gene

Sequence variations from dbSNP and Humsavar for CHODL-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000077087 -- 17,839,489(-) T/C intron_variant
rs1000100060 -- 17,845,964(-) G/A intron_variant
rs1000156544 -- 17,882,631(-) G/C intron_variant
rs1000220647 -- 17,855,492(-) G/A intron_variant
rs1000260136 -- 17,840,429(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CHODL-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv7768n54 CNV loss 21841781
nsv1059861 CNV loss 25217958
nsv1127879 CNV deletion 24896259
nsv522920 CNV loss 19592680
nsv834055 CNV gain 17160897

Additional Variant Information for CHODL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHODL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CHODL-AS1 Gene

Disorders for CHODL-AS1 Gene

Additional Disease Information for CHODL-AS1

No disorders were found for CHODL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHODL-AS1 Gene

Publications for CHODL-AS1 Gene

  1. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 58
  2. [IMAGE: molecular integration of the analysis of the human genome and its expression]. (PMID: 7757816) Auffray C … Lamy B (Comptes rendus de l'Academie des sciences. Serie III, Sciences de la vie 1995) 3 58

Products for CHODL-AS1 Gene

Sources for CHODL-AS1 Gene

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