Aliases for CHMP1B-AS1 Gene

Subcategory (RNA class) for CHMP1B-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for CHMP1B-AS1 Gene

  • CHMP1B Antisense RNA 1 2 3 5
  • CHMP1B-AS1 2 170
  • NONHSAG023376 94
  • HSALNG0120059 169
  • Lnc-MPPE1-8 170

External Ids for CHMP1B-AS1 Gene

Previous GeneCards Identifiers for CHMP1B-AS1 Gene

  • GC18M015638
  • GC18M015746
  • GC00U936751
  • GC18M014405
  • GC18M014699
  • GC18M014965
  • GC18M015243
  • GC18M015532

Summaries for CHMP1B-AS1 Gene

GeneCards Summary for CHMP1B-AS1 Gene

CHMP1B-AS1 (CHMP1B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CHMP1B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CHMP1B-AS1 Gene

Genomics for CHMP1B-AS1 Gene

GeneHancer (GH) Regulatory Elements for CHMP1B-AS1 Gene

Promoters and enhancers for CHMP1B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J011849 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +1.0 1027 5.1 FOXK2 ZBTB40 SP1 SIX5 MLX SMARCE1 RBPJ POLR2A ATF1 CREB1 CHMP1B CHMP1B-AS1 PSMG2 ENSG00000267249 CEP76 MPPE1 TUBB6 ENSG00000267199 ENSG00000267069 ENSG00000260302
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CHMP1B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CHMP1B-AS1 Gene

Genomic Locations for CHMP1B-AS1 Gene
chr18:11,851,414-11,852,751
(GRCh38/hg38)
Size:
1,338 bases
Orientation:
Minus strand
chr18:11,851,413-11,852,750
(GRCh37/hg19)
Size:
1,338 bases
Orientation:
Minus strand

Genomic View for CHMP1B-AS1 Gene

Genes around CHMP1B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHMP1B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHMP1B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CHMP1B-AS1 Gene

Proteins for CHMP1B-AS1 Gene

Post-translational modifications for CHMP1B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHMP1B-AS1 Gene

Domains & Families for CHMP1B-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CHMP1B-AS1 Gene

Function for CHMP1B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHMP1B-AS1 Gene

Localization for CHMP1B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHMP1B-AS1 Gene

Pathways & Interactions for CHMP1B-AS1 Gene

PathCards logo

SuperPathways for CHMP1B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CHMP1B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CHMP1B-AS1 Gene

Drugs & Compounds for CHMP1B-AS1 Gene

No Compound Related Data Available

Transcripts for CHMP1B-AS1 Gene

mRNA/cDNA for CHMP1B-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) NONCODE transcripts :
(1) LncBook transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CHMP1B-AS1 Gene

No ASD Table

Relevant External Links for CHMP1B-AS1 Gene

GeneLoc Exon Structure for
CHMP1B-AS1
ECgene alternative splicing isoforms for
CHMP1B-AS1

Expression for CHMP1B-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHMP1B-AS1 Gene

Orthologs for CHMP1B-AS1 Gene

Evolution for CHMP1B-AS1 Gene

ENSEMBL:
Gene Tree for CHMP1B-AS1 (if available)
TreeFam:
Gene Tree for CHMP1B-AS1 (if available)

No data available for Orthologs for CHMP1B-AS1 Gene

Paralogs for CHMP1B-AS1 Gene

No data available for Paralogs for CHMP1B-AS1 Gene

Variants for CHMP1B-AS1 Gene

Additional Variant Information for CHMP1B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHMP1B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CHMP1B-AS1 Gene

Disorders for CHMP1B-AS1 Gene

No disorders were found for CHMP1B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CHMP1B-AS1 Gene

Publications for CHMP1B-AS1 Gene

  1. Retroposition as a source of antisense long non-coding RNAs with possible regulatory functions. (PMID: 27801428) Bryzghalov O … Makałowska I (Acta biochimica Polonica 2016) 2 3 56
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for CHMP1B-AS1 Gene

Products for CHMP1B-AS1 Gene

Sources for CHMP1B-AS1 Gene