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Aliases for CHL1-AS2 Gene

Subcategory (RNA class) for CHL1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CHL1-AS2 Gene

  • CHL1 Antisense RNA 2 2 3 5
  • CHL1 Antisense RNA 2 (Non-Protein Coding) 2 3

External Ids for CHL1-AS2 Gene

Previous GeneCards Identifiers for CHL1-AS2 Gene

  • GC03M000238

Summaries for CHL1-AS2 Gene

GeneCards Summary for CHL1-AS2 Gene

CHL1-AS2 (CHL1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CHL1-AS2 include Idiopathic Scoliosis.

Additional gene information for CHL1-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHL1-AS2 Gene

Genomics for CHL1-AS2 Gene

GeneHancer (GH) Regulatory Elements for CHL1-AS2 Gene

Promoters and enhancers for CHL1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J000197 Promoter/Enhancer 1.1 Ensembl ENCODE 11.1 -34.3 -34289 1.1 MXI1 KLF1 SP3 ZFP69B GLIS2 POLR2A GLIS1 IKZF1 ZBTB26 EZH2 CHL1 CHL1-AS2 RNU6-1194P
GH03J000212 Enhancer 0.7 ENCODE 11.6 -49.2 -49204 0.2 HDGF PKNOX1 SMAD1 YBX1 BATF RELA POLR2A EED ATF7 ETV6 CHL1-AS2 CHL1 RNU6-1194P
GH03J000242 Enhancer 0.4 ENCODE 17.3 -80.2 -80177 1.3 FOS MAFK CHL1-AS2 RNU6-1194P CHL1
GH03J000244 Enhancer 0.3 ENCODE 15.6 -80.9 -80924 0.2 FOS CHL1-AS2 RNU6-1194P CHL1
GH03J000277 Enhancer 1 ENCODE dbSUPER 4.2 -115.3 -115281 2.2 PKNOX1 MXI1 SMAD1 RB1 BACH1 EBF1 BMI1 BATF KLF5 IRF4 CHL1-AS2 RNU6-1194P GC03M000265 CHL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CHL1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CHL1-AS2 Gene

Genomic Locations for CHL1-AS2 Gene
51,184 bases
Minus strand

Genomic View for CHL1-AS2 Gene

Genes around CHL1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHL1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHL1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHL1-AS2 Gene

Function for CHL1-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHL1-AS2 Gene

Localization for CHL1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHL1-AS2 Gene

Pathways & Interactions for CHL1-AS2 Gene

SuperPathways for CHL1-AS2 Gene

No Data Available

Interacting Proteins for CHL1-AS2 Gene

Gene Ontology (GO) - Biological Process for CHL1-AS2 Gene


No data available for Pathways by source and SIGNOR curated interactions for CHL1-AS2 Gene

Drugs & Compounds for CHL1-AS2 Gene

No Compound Related Data Available

Transcripts for CHL1-AS2 Gene

mRNA/cDNA for CHL1-AS2 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CHL1-AS2 Gene

No ASD Table

Relevant External Links for CHL1-AS2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CHL1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CHL1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for CHL1-AS2 Gene

This gene is overexpressed in Nerve - Tibial (x7.7).
genes like me logo Genes that share expression patterns with CHL1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHL1-AS2 Gene

Orthologs for CHL1-AS2 Gene

Evolution for CHL1-AS2 Gene

Gene Tree for CHL1-AS2 (if available)
Gene Tree for CHL1-AS2 (if available)

No data available for Orthologs for CHL1-AS2 Gene

Paralogs for CHL1-AS2 Gene

No data available for Paralogs for CHL1-AS2 Gene

Variants for CHL1-AS2 Gene

Sequence variations from dbSNP and Humsavar for CHL1-AS2 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000018286 -- 120,783(-) T/C intron_variant
rs1000048505 -- 199,094(-) C/T upstream_transcript_variant
rs1000107894 -- 117,348(-) A/T intron_variant
rs1000118864 -- 181,320(-) A/G intron_variant
rs1000119858 -- 127,980(-) A/G intron_variant

Additional Variant Information for CHL1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CHL1-AS2 Gene

Disorders for CHL1-AS2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CHL1-AS2 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
idiopathic scoliosis
  • scoliosis idiopathic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with CHL1-AS2: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for CHL1-AS2 Gene

Publications for CHL1-AS2 Gene

  1. Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D. (PMID: 22041458) Clark SL … van den Oord EJ (Psychological medicine 2012) 3 58
  2. Genome-wide association studies of adolescent idiopathic scoliosis suggest candidate susceptibility genes. (PMID: 21216876) Sharma S … Wise CA (Human molecular genetics 2011) 3 58
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for CHL1-AS2 Gene

Sources for CHL1-AS2 Gene

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