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Aliases for CHL1-AS2 Gene

Subcategory (RNA class) for CHL1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CHL1-AS2 Gene

  • CHL1 Antisense RNA 2 2 3 5
  • CHL1 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for CHL1-AS2 Gene

Previous GeneCards Identifiers for CHL1-AS2 Gene

  • GC03M000238

Summaries for CHL1-AS2 Gene

GeneCards Summary for CHL1-AS2 Gene

CHL1-AS2 (CHL1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CHL1-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHL1-AS2 Gene

Genomics for CHL1-AS2 Gene

GeneHancer (GH) Regulatory Elements for CHL1-AS2 Gene

Promoters and enhancers for CHL1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I000197 Promoter/Enhancer 1.1 Ensembl ENCODE 11.1 -34.3 -34289 1.1 MXI1 KLF1 SP3 ZFP69B GLIS2 POLR2A GLIS1 ZBTB26 EZH2 CHL1 CHL1-AS2 RNU6-1194P
GH03I000212 Enhancer 0.7 ENCODE 11.6 -49.2 -49204 0.2 HDGF PKNOX1 SMAD1 YBX1 BATF RELA POLR2A ATF7 ETV6 IKZF2 CHL1-AS2 CHL1 RNU6-1194P
GH03I000242 Enhancer 0.4 ENCODE 17.3 -80.2 -80177 1.3 FOS MAFK CHL1-AS2 RNU6-1194P CHL1
GH03I000244 Enhancer 0.3 ENCODE 15.6 -80.9 -80924 0.2 FOS CHL1-AS2 RNU6-1194P CHL1
GH03I000277 Enhancer 0.9 ENCODE dbSUPER 4.2 -115.3 -115281 2.2 PKNOX1 MXI1 SMAD1 RB1 BACH1 EBF1 BMI1 BATF KLF5 IRF4 CHL1-AS2 RNU6-1194P GC03M000265 CHL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CHL1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CHL1-AS2 Gene

Genomic Locations for CHL1-AS2 Gene
chr3:112,166-163,349
(GRCh38/hg38)
Size:
51,184 bases
Orientation:
Minus strand
chr3:237,441-239,090
(GRCh37/hg19)

Genomic View for CHL1-AS2 Gene

Genes around CHL1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHL1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHL1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHL1-AS2 Gene

Proteins for CHL1-AS2 Gene

Post-translational modifications for CHL1-AS2 Gene

No Post-translational modifications

Other Protein References for CHL1-AS2 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for CHL1-AS2 Gene

Domains & Families for CHL1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHL1-AS2 Gene

Function for CHL1-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHL1-AS2 Gene

Localization for CHL1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHL1-AS2 Gene

Pathways & Interactions for CHL1-AS2 Gene

SuperPathways for CHL1-AS2 Gene

No Data Available

Interacting Proteins for CHL1-AS2 Gene

Gene Ontology (GO) - Biological Process for CHL1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CHL1-AS2 Gene

Drugs & Compounds for CHL1-AS2 Gene

No Compound Related Data Available

Transcripts for CHL1-AS2 Gene

mRNA/cDNA for CHL1-AS2 Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CHL1-AS2 Gene

No ASD Table

Relevant External Links for CHL1-AS2 Gene

GeneLoc Exon Structure for
CHL1-AS2
ECgene alternative splicing isoforms for
CHL1-AS2

Expression for CHL1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CHL1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for CHL1-AS2 Gene

This gene is overexpressed in Nerve - Tibial (x7.7).
genes like me logo Genes that share expression patterns with CHL1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHL1-AS2 Gene

Orthologs for CHL1-AS2 Gene

Evolution for CHL1-AS2 Gene

ENSEMBL:
Gene Tree for CHL1-AS2 (if available)
TreeFam:
Gene Tree for CHL1-AS2 (if available)

No data available for Orthologs for CHL1-AS2 Gene

Paralogs for CHL1-AS2 Gene

No data available for Paralogs for CHL1-AS2 Gene

Variants for CHL1-AS2 Gene

Sequence variations from dbSNP and Humsavar for CHL1-AS2 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000018286 -- 120,783(-) T/C intron_variant
rs1000048505 -- 199,094(-) C/T upstream_transcript_variant
rs1000107894 -- 117,348(-) A/T intron_variant
rs1000118864 -- 181,320(-) A/G intron_variant
rs1000119858 -- 127,980(-) A/G intron_variant

Additional Variant Information for CHL1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHL1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CHL1-AS2 Gene

Disorders for CHL1-AS2 Gene

No disorders were found for CHL1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CHL1-AS2 Gene

Publications for CHL1-AS2 Gene

  1. Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D. (PMID: 22041458) Clark SL … van den Oord EJ (Psychological medicine 2012) 3 58
  2. Genome-wide association studies of adolescent idiopathic scoliosis suggest candidate susceptibility genes. (PMID: 21216876) Sharma S … Wise CA (Human molecular genetics 2011) 3 58
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for CHL1-AS2 Gene

Sources for CHL1-AS2 Gene

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