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Aliases for CHL1-AS1 Gene

Subcategory (RNA class) for CHL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CHL1-AS1 Gene

  • CHL1 Antisense RNA 1 2 3 5
  • CHL1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for CHL1-AS1 Gene

Previous GeneCards Identifiers for CHL1-AS1 Gene

  • GC00U933761

Summaries for CHL1-AS1 Gene

GeneCards Summary for CHL1-AS1 Gene

CHL1-AS1 (CHL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CHL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHL1-AS1 Gene

Genomics for CHL1-AS1 Gene

GeneHancer (GH) Regulatory Elements for CHL1-AS1 Gene

Promoters and enhancers for CHL1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J000354 Enhancer 0.7 ENCODE 0.3 +31.2 31242 0.2 CTCF RB1 MCM2 RAD21 GATA3 SMC3 ZNF143 ZNF444 MIXL1 SMARCA5 CHL1-AS1 RPS8P6 CHL1
GH03J000355 Enhancer 0.3 ENCODE 0.3 +30.2 30168 1 FOS CHL1 CHL1-AS1 RPS8P6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CHL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CHL1-AS1 Gene

Genomic Locations for CHL1-AS1 Gene
chr3:363,370-385,795
(GRCh38/hg38)
Size:
22,426 bases
Orientation:
Minus strand
chr3:405,053-427,478
(GRCh37/hg19)
Size:
22,426 bases
Orientation:
Minus strand

Genomic View for CHL1-AS1 Gene

Genes around CHL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHL1-AS1 Gene

Function for CHL1-AS1 Gene

Phenotypes From GWAS Catalog for CHL1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHL1-AS1 Gene

Localization for CHL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHL1-AS1 Gene

Pathways & Interactions for CHL1-AS1 Gene

SuperPathways for CHL1-AS1 Gene

No Data Available

Interacting Proteins for CHL1-AS1 Gene

Gene Ontology (GO) - Biological Process for CHL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CHL1-AS1 Gene

Drugs & Compounds for CHL1-AS1 Gene

No Compound Related Data Available

Transcripts for CHL1-AS1 Gene

mRNA/cDNA for CHL1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CHL1-AS1 Gene

No ASD Table

Relevant External Links for CHL1-AS1 Gene

GeneLoc Exon Structure for
CHL1-AS1
ECgene alternative splicing isoforms for
CHL1-AS1

Expression for CHL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CHL1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CHL1-AS1 Gene

This gene is overexpressed in Nerve - Tibial (x9.4).
genes like me logo Genes that share expression patterns with CHL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHL1-AS1 Gene

Orthologs for CHL1-AS1 Gene

Evolution for CHL1-AS1 Gene

ENSEMBL:
Gene Tree for CHL1-AS1 (if available)
TreeFam:
Gene Tree for CHL1-AS1 (if available)

No data available for Orthologs for CHL1-AS1 Gene

Paralogs for CHL1-AS1 Gene

No data available for Paralogs for CHL1-AS1 Gene

Variants for CHL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for CHL1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000091066 -- 365,828(-) G/A intron_variant
rs1000096776 -- 370,898(-) T/C intron_variant
rs1000109965 -- 370,382(-) A/G intron_variant
rs1000162526 -- 370,128(-) G/A intron_variant
rs1000299385 -- 369,970(-) T/C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CHL1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4608n100 CNV gain 25217958
dgv4613n100 CNV loss 25217958
esv2667629 CNV deletion 23128226
esv2675472 CNV deletion 23128226
esv2759122 CNV gain+loss 17122850
esv2763731 CNV gain+loss 21179565
esv3594893 CNV loss 21293372
esv3594894 CNV gain 21293372
esv3594898 CNV loss 21293372
esv3594899 CNV gain 21293372
esv3594900 CNV loss 21293372
esv3594901 CNV gain 21293372
esv3594902 CNV loss 21293372
nsv1004600 CNV loss 25217958
nsv1005290 CNV loss 25217958
nsv1010970 CNV gain 25217958
nsv1015041 CNV gain 25217958
nsv469898 CNV loss 18288195
nsv526340 CNV loss 19592680
nsv589242 CNV gain 21841781
nsv589291 CNV loss 21841781
nsv589293 CNV loss 21841781
nsv834589 CNV gain 17160897

Additional Variant Information for CHL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CHL1-AS1 Gene

Disorders for CHL1-AS1 Gene

Additional Disease Information for CHL1-AS1

No disorders were found for CHL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHL1-AS1 Gene

Publications for CHL1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CHL1-AS1 Gene

Sources for CHL1-AS1 Gene

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