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Aliases for CHKB-DT Gene

Subcategory (RNA class) for CHKB-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CHKB-DT Gene

  • CHKB Divergent Transcript 2 3
  • CHKB Antisense RNA 1 (Head To Head) 2 3 5
  • CHKB-AS1 3 5
  • CTA-384D8.20 3

External Ids for CHKB-DT Gene

Previous HGNC Symbols for CHKB-DT Gene

  • CHKB-AS1

Summaries for CHKB-DT Gene

GeneCards Summary for CHKB-DT Gene

CHKB-DT (CHKB Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CHKB-DT include Muscular Dystrophy, Congenital, Megaconial Type.

Additional gene information for CHKB-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHKB-DT Gene

Genomics for CHKB-DT Gene

GeneHancer (GH) Regulatory Elements for CHKB-DT Gene

Promoters and enhancers for CHKB-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J050581 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 -0.5 -496 2.7 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF207 FOS CHKB CHKB-CPT1B CHKB-DT CPT1B MAPK8IP2
GH22J050584 Enhancer 0.2 ENCODE 656.6 +1.5 1538 0 CHKB-DT CHKB-CPT1B ENSG00000272940 CHKB
GH22J050670 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +90.0 89978 4.8 ZFP64 ZSCAN4 KLF17 FEZF1 KLF14 ZNF2 ZNF335 GLIS2 EGR1 KLF7 SHANK3 BRD1 CPT1B ZBED4 ENSG00000272836 LOC105373095 LMF2 NCAPH2 TUBGCP6 CHKB
GH22J050523 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 4.5 -53.3 -53322 12.1 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 SCO2 TYMP ODF3B RABL2B BRD1 NCAPH2 ENSG00000272836 ENSG00000272821 TUBGCP6 SYCE3
GH22J050588 Enhancer 0.2 FANTOM5 0.4 +5.2 5200 0.4 DENND6B MAPK8IP2 MOV10L1 RABL2B ENSG00000272940 CHKB-DT CHKB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CHKB-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CHKB-DT Gene

Genomic Locations for CHKB-DT Gene
chr22:50,583,026-50,595,281
(GRCh38/hg38)
Size:
12,256 bases
Orientation:
Plus strand
chr22:51,021,455-51,022,356
(GRCh37/hg19)

Genomic View for CHKB-DT Gene

Genes around CHKB-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHKB-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHKB-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHKB-DT Gene

Function for CHKB-DT Gene

Phenotypes From GWAS Catalog for CHKB-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHKB-DT Gene

Localization for CHKB-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHKB-DT Gene

Pathways & Interactions for CHKB-DT Gene

SuperPathways for CHKB-DT Gene

No Data Available

Interacting Proteins for CHKB-DT Gene

Gene Ontology (GO) - Biological Process for CHKB-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CHKB-DT Gene

Drugs & Compounds for CHKB-DT Gene

No Compound Related Data Available

Transcripts for CHKB-DT Gene

mRNA/cDNA for CHKB-DT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CHKB-DT Gene

No ASD Table

Relevant External Links for CHKB-DT Gene

GeneLoc Exon Structure for
CHKB-DT
ECgene alternative splicing isoforms for
CHKB-DT

Expression for CHKB-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHKB-DT Gene

Orthologs for CHKB-DT Gene

Evolution for CHKB-DT Gene

ENSEMBL:
Gene Tree for CHKB-DT (if available)
TreeFam:
Gene Tree for CHKB-DT (if available)

No data available for Orthologs for CHKB-DT Gene

Paralogs for CHKB-DT Gene

No data available for Paralogs for CHKB-DT Gene

Variants for CHKB-DT Gene

Sequence variations from dbSNP and Humsavar for CHKB-DT Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs114094125 uncertain-significance, Congenital Muscular Dystrophy, CHKB-related 50,582,878(+) C/G upstream_transcript_variant
rs138205828 uncertain-significance, likely-benign, benign, Congenital Muscular Dystrophy, CHKB-related, not specified, Muscular dystrophy, congenital, megaconial type 50,582,633(+) T/C upstream_transcript_variant
rs140867913 uncertain-significance, Congenital Muscular Dystrophy, CHKB-related 50,582,307(+) G/A upstream_transcript_variant
rs146693439 likely-benign, not specified, Muscular dystrophy, congenital, megaconial type 50,581,544(+) A/G upstream_transcript_variant
rs180979987 uncertain-significance, likely-benign, benign, Congenital Muscular Dystrophy, CHKB-related, not specified, Muscular dystrophy, congenital, megaconial type 50,582,333(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CHKB-DT Gene

Variant ID Type Subtype PubMed ID
nsv1057656 CNV gain 25217958
nsv1059234 CNV gain 25217958
nsv1067172 CNV gain 25217958
nsv1116965 CNV deletion 24896259
nsv589222 CNV gain 21841781
nsv589223 CNV loss 21841781
nsv589224 CNV loss 21841781
nsv829340 CNV gain 20364138
nsv829342 CNV loss 20364138
nsv834239 CNV loss 17160897

Additional Variant Information for CHKB-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHKB-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CHKB-DT Gene

Disorders for CHKB-DT Gene

MalaCards: The human disease database

(1) MalaCards diseases for CHKB-DT Gene - From: GeneCards

Disorder Aliases PubMed IDs
muscular dystrophy, congenital, megaconial type
  • mdcmc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CHKB-DT

genes like me logo Genes that share disorders with CHKB-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CHKB-DT Gene

Publications for CHKB-DT Gene

  1. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins JE … Dunham I (Genome biology 2004) 3 58

Products for CHKB-DT Gene

Sources for CHKB-DT Gene

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