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Aliases for CHKB-AS1 Gene

Subcategory (RNA class) for CHKB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CHKB-AS1 Gene

  • CHKB Antisense RNA 1 (Head To Head) 2 3 5
  • CTA-384D8.20 3

External Ids for CHKB-AS1 Gene

Previous GeneCards Identifiers for CHKB-AS1 Gene

  • GC22P051025

Summaries for CHKB-AS1 Gene

GeneCards Summary for CHKB-AS1 Gene

CHKB-AS1 (CHKB Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CHKB-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CHKB-AS1 Gene

Genomics for CHKB-AS1 Gene

GeneHancer (GH) Regulatory Elements for CHKB-AS1 Gene

Promoters and enhancers for CHKB-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I050581 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 -0.5 -496 2.7 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF207 FOS CHKB CHKB-AS1 CHKB-CPT1B CPT1B MAPK8IP2
GH22I050584 Enhancer 0.2 ENCODE 556.6 +1.5 1538 0 CHKB-AS1 CHKB-CPT1B ENSG00000272940 CHKB
GH22I050670 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.5 +90.0 89978 4.8 ZNF529 ZFP64 ZSCAN4 KLF17 FEZF1 ZNF2 ZNF335 GLIS2 EGR1 KLF7 SHANK3 BRD1 CPT1B ZBED4 ENSG00000272836 LOC105373095 RABL2B LMF2 NCAPH2 TUBGCP6
GH22I050523 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 4.5 -53.3 -53322 12.1 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 SCO2 TYMP ODF3B RABL2B ENSG00000272821 SYCE3 BRD1 CHKB ENSG00000272836 PLXNB2
GH22I050588 Enhancer 0.2 FANTOM5 0.4 +5.2 5200 0.4 DENND6B MAPK8IP2 MOV10L1 RABL2B ENSG00000272940 CHKB-AS1 CHKB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CHKB-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CHKB-AS1 Gene

Genomic Locations for CHKB-AS1 Gene
12,256 bases
Plus strand

Genomic View for CHKB-AS1 Gene

Genes around CHKB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CHKB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHKB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHKB-AS1 Gene

Proteins for CHKB-AS1 Gene

Post-translational modifications for CHKB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHKB-AS1 Gene

Domains & Families for CHKB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CHKB-AS1 Gene

Function for CHKB-AS1 Gene

Phenotypes From GWAS Catalog for CHKB-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHKB-AS1 Gene

Localization for CHKB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHKB-AS1 Gene

Pathways & Interactions for CHKB-AS1 Gene

SuperPathways for CHKB-AS1 Gene

No Data Available

Interacting Proteins for CHKB-AS1 Gene

Gene Ontology (GO) - Biological Process for CHKB-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CHKB-AS1 Gene

Drugs & Compounds for CHKB-AS1 Gene

No Compound Related Data Available

Transcripts for CHKB-AS1 Gene

mRNA/cDNA for CHKB-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CHKB-AS1 Gene

No ASD Table

Relevant External Links for CHKB-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CHKB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CHKB-AS1 Gene

genes like me logo Genes that share expression patterns with CHKB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHKB-AS1 Gene

Orthologs for CHKB-AS1 Gene

Evolution for CHKB-AS1 Gene

Gene Tree for CHKB-AS1 (if available)
Gene Tree for CHKB-AS1 (if available)

No data available for Orthologs for CHKB-AS1 Gene

Paralogs for CHKB-AS1 Gene

No data available for Paralogs for CHKB-AS1 Gene

Variants for CHKB-AS1 Gene

Sequence variations from dbSNP and Humsavar for CHKB-AS1 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs114094125 uncertain-significance, Congenital Muscular Dystrophy, CHKB-related 50,582,878(+) C/G upstream_transcript_variant
rs138205828 uncertain-significance, likely-benign, benign, Congenital Muscular Dystrophy, CHKB-related, not specified, Muscular dystrophy, congenital, megaconial type 50,582,633(+) T/C upstream_transcript_variant
rs140867913 uncertain-significance, Congenital Muscular Dystrophy, CHKB-related 50,582,307(+) G/A upstream_transcript_variant
rs146693439 likely-benign, not specified, Muscular dystrophy, congenital, megaconial type 50,581,544(+) A/G upstream_transcript_variant
rs180979987 uncertain-significance, likely-benign, benign, Congenital Muscular Dystrophy, CHKB-related, not specified, Muscular dystrophy, congenital, megaconial type 50,582,333(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CHKB-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1057656 CNV gain 25217958
nsv1059234 CNV gain 25217958
nsv1067172 CNV gain 25217958
nsv1116965 CNV deletion 24896259
nsv589222 CNV gain 21841781
nsv589223 CNV loss 21841781
nsv589224 CNV loss 21841781
nsv829340 CNV gain 20364138
nsv829342 CNV loss 20364138
nsv834239 CNV loss 17160897

Additional Variant Information for CHKB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CHKB-AS1 Gene

Disorders for CHKB-AS1 Gene

Additional Disease Information for CHKB-AS1

No disorders were found for CHKB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHKB-AS1 Gene

Publications for CHKB-AS1 Gene

  1. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins JE … Dunham I (Genome biology 2004) 3 58

Products for CHKB-AS1 Gene

Sources for CHKB-AS1 Gene

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