Aliases for CHKA-DT Gene

Data sources for CHKA-DT Gene:

RNA type for CHKA-DT Gene

lncRNA

Aliases for CHKA-DT Gene

External Ids for CHKA-DT Gene

Summaries for CHKA-DT Gene

GeneCards Summary for CHKA-DT Gene

CHKA-DT (CHKA Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CHKA-DT Gene

Genomics for CHKA-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CHKA-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CHKA-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CHKA-DT Gene

Latest Assembly
chr11:68,121,469-68,130,521
(GRCh38/hg38)
Size:
9,053 bases
Orientation:
Plus strand

Previous Assembly
chr11:67,889,520-67,897,985
(GRCh37/hg19 by Ensembl)
Size:
8,466 bases
Orientation:
Plus strand

Genomic View for CHKA-DT Gene

Genes around CHKA-DT on UCSC Golden Path with GeneCards custom track
CHKA-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CHKA-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CHKA-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CHKA-DT Gene

Proteins for CHKA-DT Gene

Post-translational modifications for CHKA-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CHKA-DT Gene

Domains & Families for CHKA-DT Gene

Gene Families for CHKA-DT Gene

genes like me logo Genes that share domains with CHKA-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CHKA-DT Gene

Function for CHKA-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CHKA-DT Gene

Localization for CHKA-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CHKA-DT Gene

Pathways & Interactions for CHKA-DT Gene

PathCards logo

SuperPathways for CHKA-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for CHKA-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CHKA-DT Gene

Drugs & Compounds for CHKA-DT Gene

No Compound Related Data Available

Transcripts for CHKA-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CHKA-DT Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000281255_9606 lncRNA 491 3

Ensembl: ENST00000527519 (view in UCSC) ,

LNCipedia: lnc-TCIRG1-2:6,

NONCODE: NONHSAT022509.2,

URS0000EEB859_9606 lncRNA 1848 1

Ensembl: ENST00000530842 (view in UCSC) ,

URS00008B51EB_9606 lncRNA 1604 2

LNCipedia: lnc-TCIRG1-2:1,

NONCODE: NONHSAT022506.2,

URS00008BFC85_9606 lncRNA 1222 2

LNCipedia: lnc-TCIRG1-2:5,

NONCODE: NONHSAT022507.2,

URS0000D5DB1B_9606 lncRNA 998 2

LncBook: HSALNT0177348,

LNCipedia: lnc-TCIRG1-2:17,

CHKA-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for CHKA-DT Gene

No ASD Table

Relevant External Links for CHKA-DT Gene

GeneLoc Exon Structure for
CHKA-DT

No data available for mRNA/cDNA for CHKA-DT Gene

Expression for CHKA-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CHKA-DT Gene

Orthologs for CHKA-DT Gene

Evolution for CHKA-DT Gene

ENSEMBL:
Gene Tree for CHKA-DT (if available)
TreeFam:
Gene Tree for CHKA-DT (if available)
Alliance of Genome Resources:
Additional Orthologs for CHKA-DT

No data available for Orthologs for CHKA-DT Gene

Paralogs for CHKA-DT Gene

No data available for Paralogs for CHKA-DT Gene

Variants for CHKA-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CHKA-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for CHKA-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CHKA-DT
Leiden Open Variation Database (LOVD)
CHKA-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CHKA-DT Gene

Disorders for CHKA-DT Gene

Additional Disease Information for CHKA-DT

Open Targets Platform
Open Targets Platform

No disorders were found for CHKA-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CHKA-DT Gene

Publications for CHKA-DT Gene

No publications were found for CHKA-DT Gene.

No data available for Mastermind for CHKA-DT Gene

Products for CHKA-DT Gene

Sources for CHKA-DT Gene