Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CH17-340M24.3 Gene

Subcategory (RNA class) for CH17-340M24.3 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for CH17-340M24.3 Gene

  • Uncharacterized Protein BC009467 3
  • AC244090.1 5

External Ids for CH17-340M24.3 Gene

Summaries for CH17-340M24.3 Gene

GeneCards Summary for CH17-340M24.3 Gene

CH17-340M24.3 (Uncharacterized Protein BC009467) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CH17-340M24.3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CH17-340M24.3 Gene

Genomics for CH17-340M24.3 Gene

GeneHancer (GH) Regulatory Elements for CH17-340M24.3 Gene

Promoters and enhancers for CH17-340M24.3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ154426 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 -1.0 -1034 5.4 PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 FOS SP3 NFYC ZHX2 ATP6AP1 CH17-340M24.3 FAM50A FAM3A SNORA70 HCFC1 SNORA56 PLXNA3 DKC1 GC0XP154438
GH0XJ154483 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 12.2 -57.4 -57355 3.8 PKNOX1 ATF1 ARNT SIN3A ZBTB7B POLR2B ZNF766 GLIS2 FOS ATF7 UBL4A LAGE3 FAM3A FAM50A GDI1 CH17-340M24.3 ATP6AP1 SLC10A3 GC0XM154482
GH0XJ154364 Promoter/Enhancer 2.5 VISTA EPDnew Ensembl ENCODE dbSUPER 4 +58.3 58289 10.7 HDGF PKNOX1 CLOCK SMAD1 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 EMD FLNA PLXNA3 FAM50A SLC10A3 DKC1 CH17-340M24.3 ENSG00000285018 GC0XM154352 GC0XM154351
GH0XJ154376 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 4 +49.3 49334 5.7 HDGF PKNOX1 ARNT ARID4B SIN3A YY1 POLR2B ZNF213 E2F8 ZNF207 EMD PLXNA3 DKC1 HCFC1 SNORA70 SLC10A3 SNORA56 TMEM187 RPL10 CH17-340M24.3
GH0XJ154325 Enhancer 0.7 Ensembl ENCODE 11.7 +101.5 101499 2 OSR2 E2F1 GATA3 SCRT2 ZNF600 ZBTB17 PLXNA3 ATP6AP1 CH17-340M24.3 GDI1 FAM50A DNASE1L1 GC0XP154344 GC0XP154343 PIR36226 TKTL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CH17-340M24.3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CH17-340M24.3 Gene

Genomic Locations for CH17-340M24.3 Gene
chrX:154,424,380-154,428,479
(GRCh38/hg38)
Size:
4,100 bases
Orientation:
Minus strand
chrX:153,656,537-153,656,795
(GRCh37/hg19)
Size:
259 bases
Orientation:
Minus strand

Genomic View for CH17-340M24.3 Gene

Genes around CH17-340M24.3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CH17-340M24.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CH17-340M24.3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CH17-340M24.3 Gene

Proteins for CH17-340M24.3 Gene

Post-translational modifications for CH17-340M24.3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CH17-340M24.3 Gene

Domains & Families for CH17-340M24.3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CH17-340M24.3 Gene

Function for CH17-340M24.3 Gene

Phenotypes From GWAS Catalog for CH17-340M24.3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CH17-340M24.3 Gene

Localization for CH17-340M24.3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CH17-340M24.3 Gene

Pathways & Interactions for CH17-340M24.3 Gene

SuperPathways for CH17-340M24.3 Gene

No Data Available

Interacting Proteins for CH17-340M24.3 Gene

Gene Ontology (GO) - Biological Process for CH17-340M24.3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CH17-340M24.3 Gene

Drugs & Compounds for CH17-340M24.3 Gene

No Compound Related Data Available

Transcripts for CH17-340M24.3 Gene

mRNA/cDNA for CH17-340M24.3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CH17-340M24.3 Gene

No ASD Table

Relevant External Links for CH17-340M24.3 Gene

GeneLoc Exon Structure for
CH17-340M24.3

Expression for CH17-340M24.3 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CH17-340M24.3 Gene

Orthologs for CH17-340M24.3 Gene

Evolution for CH17-340M24.3 Gene

ENSEMBL:
Gene Tree for CH17-340M24.3 (if available)
TreeFam:
Gene Tree for CH17-340M24.3 (if available)

No data available for Orthologs for CH17-340M24.3 Gene

Paralogs for CH17-340M24.3 Gene

No data available for Paralogs for CH17-340M24.3 Gene

Variants for CH17-340M24.3 Gene

Sequence variations from dbSNP and Humsavar for CH17-340M24.3 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1001440437 -- 154,426,943(-) T/C intron_variant
rs1001808310 -- 154,425,605(-) A/G intron_variant
rs1002359264 -- 154,428,660(-) G/T upstream_transcript_variant
rs1002852664 -- 154,428,994(-) A/C upstream_transcript_variant
rs1003522172 -- 154,423,884(-) A/C downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for CH17-340M24.3 Gene

Disorders for CH17-340M24.3 Gene

Additional Disease Information for CH17-340M24.3

No disorders were found for CH17-340M24.3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CH17-340M24.3 Gene

Publications for CH17-340M24.3 Gene

No publications were found for CH17-340M24.3 Gene.

Products for CH17-340M24.3 Gene

Sources for CH17-340M24.3 Gene

Content
Loading form....