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Aliases for CFTR-AS1 Gene

Subcategory (RNA class) for CFTR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CFTR-AS1 Gene

  • CFTR Antisense RNA 1 2 3 5
  • BGas 3

External Ids for CFTR-AS1 Gene

Summaries for CFTR-AS1 Gene

GeneCards Summary for CFTR-AS1 Gene

CFTR-AS1 (CFTR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CFTR-AS1 include Cystic Fibrosis.

Additional gene information for CFTR-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFTR-AS1 Gene

Genomics for CFTR-AS1 Gene

GeneHancer (GH) Regulatory Elements for CFTR-AS1 Gene

Promoters and enhancers for CFTR-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J117587 Enhancer 1.1 ENCODE dbSUPER 11.3 -24.7 -24686 2.9 PKNOX1 FOXA2 SMAD1 SIN3A IRF4 BRCA1 YY1 ATF7 RUNX3 DEK CFTR-AS1 ENSG00000234001 ENSG00000083622 CFTR
GH07J117605 Enhancer 0.6 ENCODE 10.5 -41.2 -41186 0.2 SCRT1 FOXA2 RXRA MAX CEBPB REST MCM2 EP300 SP1 SCRT2 CFTR-AS1 ENSG00000234001 ENSG00000083622 CFTR
GH07J117630 Enhancer 0.4 ENCODE 10.4 -66.0 -65966 0.2 ZNF701 SPI1 LSM8 CFTR-AS1 ENSG00000083622 ENSG00000234001 CFTR
GH07J117585 Enhancer 0.3 dbSUPER 11.2 -21.4 -21432 0.7 GATA3 ENSG00000234001 CFTR-AS1 CFTR
GH07J117603 Enhancer 0.3 dbSUPER 10.5 -39.1 -39123 0.9 PKNOX1 CFTR-AS1 ENSG00000234001 ENSG00000083622 CFTR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CFTR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CFTR-AS1 Gene

Genomic Locations for CFTR-AS1 Gene
chr7:117,560,733-117,564,676
(GRCh38/hg38)
Size:
3,944 bases
Orientation:
Minus strand
chr7:117,200,787-117,204,730
(GRCh37/hg19)

Genomic View for CFTR-AS1 Gene

Genes around CFTR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFTR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFTR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFTR-AS1 Gene

Proteins for CFTR-AS1 Gene

Post-translational modifications for CFTR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CFTR-AS1 Gene

Domains & Families for CFTR-AS1 Gene

Gene Families for CFTR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CFTR-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CFTR-AS1 Gene

Function for CFTR-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CFTR-AS1 Gene

Localization for CFTR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CFTR-AS1 Gene

Pathways & Interactions for CFTR-AS1 Gene

SuperPathways for CFTR-AS1 Gene

No Data Available

Interacting Proteins for CFTR-AS1 Gene

Gene Ontology (GO) - Biological Process for CFTR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CFTR-AS1 Gene

Drugs & Compounds for CFTR-AS1 Gene

No Compound Related Data Available

Transcripts for CFTR-AS1 Gene

mRNA/cDNA for CFTR-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CFTR-AS1 Gene

No ASD Table

Relevant External Links for CFTR-AS1 Gene

GeneLoc Exon Structure for
CFTR-AS1
ECgene alternative splicing isoforms for
CFTR-AS1

Expression for CFTR-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CFTR-AS1 Gene

Orthologs for CFTR-AS1 Gene

Evolution for CFTR-AS1 Gene

ENSEMBL:
Gene Tree for CFTR-AS1 (if available)
TreeFam:
Gene Tree for CFTR-AS1 (if available)

No data available for Orthologs for CFTR-AS1 Gene

Paralogs for CFTR-AS1 Gene

No data available for Paralogs for CFTR-AS1 Gene

Variants for CFTR-AS1 Gene

Additional Variant Information for CFTR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CFTR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CFTR-AS1 Gene

Disorders for CFTR-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CFTR-AS1 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
cystic fibrosis
  • cf
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with CFTR-AS1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for CFTR-AS1 Gene

Publications for CFTR-AS1 Gene

  1. Long Non-coding RNA BGas Regulates the Cystic Fibrosis Transmembrane Conductance Regulator. (PMID: 27434588) Saayman SM … Morris KV (Molecular therapy : the journal of the American Society of Gene Therapy 2016) 2 3 58
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for CFTR-AS1 Gene

Sources for CFTR-AS1 Gene

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