Aliases for CFLAR-AS1 Gene

Subcategory (RNA class) for CFLAR-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for CFLAR-AS1 Gene

  • CFLAR Antisense RNA 1 2 3 5
  • Amyotrophic Lateral Sclerosis 2 (Juvenile) Chromosome Region, Candidate 10 2 3
  • CFLAR Antisense RNA 1 (Non-Protein Coding) 2 3
  • CFLAR-AS1 2 168
  • HSALNG0021529 167
  • NONHSAG030236 92
  • ALS2CR10 3

External Ids for CFLAR-AS1 Gene

Previous HGNC Symbols for CFLAR-AS1 Gene

  • ALS2CR10

Previous GeneCards Identifiers for CFLAR-AS1 Gene

  • GC02M202007

Summaries for CFLAR-AS1 Gene

GeneCards Summary for CFLAR-AS1 Gene

CFLAR-AS1 (CFLAR Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CFLAR-AS1 include Esophageal Cancer and Astrocytoma.

Additional gene information for CFLAR-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CFLAR-AS1 Gene

Genomics for CFLAR-AS1 Gene

GeneHancer (GH) Regulatory Elements for CFLAR-AS1 Gene

Promoters and enhancers for CFLAR-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CFLAR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CFLAR-AS1 Gene

Genomic Locations for CFLAR-AS1 Gene
chr2:201,140,278-201,157,823
(GRCh38/hg38)
Size:
17,546 bases
Orientation:
Minus strand
chr2:202,005,007-202,022,546
(GRCh37/hg19)
Size:
17,540 bases
Orientation:
Minus strand

Genomic View for CFLAR-AS1 Gene

Genes around CFLAR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFLAR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFLAR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFLAR-AS1 Gene

Proteins for CFLAR-AS1 Gene

Post-translational modifications for CFLAR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CFLAR-AS1 Gene

Domains & Families for CFLAR-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CFLAR-AS1 Gene

Function for CFLAR-AS1 Gene

Phenotypes From GWAS Catalog for CFLAR-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CFLAR-AS1 Gene

Localization for CFLAR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CFLAR-AS1 Gene

Pathways & Interactions for CFLAR-AS1 Gene

PathCards logo

SuperPathways for CFLAR-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CFLAR-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CFLAR-AS1 Gene

Drugs & Compounds for CFLAR-AS1 Gene

No Compound Related Data Available

Transcripts for CFLAR-AS1 Gene

mRNA/cDNA for CFLAR-AS1 Gene

35 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
23 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
25 NONCODE transcripts :
24 LncBook transcripts :
33 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFLAR-AS1 Gene

No ASD Table

Relevant External Links for CFLAR-AS1 Gene

GeneLoc Exon Structure for
CFLAR-AS1

Expression for CFLAR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CFLAR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CFLAR-AS1 Gene

This gene is overexpressed in Whole Blood (x6.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CFLAR-AS1

SOURCE GeneReport for Unigene cluster for CFLAR-AS1 Gene:

Hs.664613
genes like me logo Genes that share expression patterns with CFLAR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CFLAR-AS1 Gene

Orthologs for CFLAR-AS1 Gene

Evolution for CFLAR-AS1 Gene

ENSEMBL:
Gene Tree for CFLAR-AS1 (if available)
TreeFam:
Gene Tree for CFLAR-AS1 (if available)

No data available for Orthologs for CFLAR-AS1 Gene

Paralogs for CFLAR-AS1 Gene

No data available for Paralogs for CFLAR-AS1 Gene

Variants for CFLAR-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CFLAR-AS1 Gene

SNP ID Clinical significance and condition Chr 02 pos Variation AA Info Type
783347 Benign: not provided 201,145,378(-) C/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for CFLAR-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CFLAR-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3593972 CNV loss 21293372
nsv584160 CNV loss 21841781

Additional Variant Information for CFLAR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CFLAR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CFLAR-AS1 Gene

Disorders for CFLAR-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for CFLAR-AS1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
esophageal cancer
  • esophageal cancer, somatic
astrocytoma
  • astrocytic tumor
amyotrophic lateral sclerosis 2, juvenile
  • als2
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CFLAR-AS1

genes like me logo Genes that share disorders with CFLAR-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CFLAR-AS1 Gene

Publications for CFLAR-AS1 Gene

  1. Three Circulating LncRNA Predict Early Progress of Esophageal Squamous Cell Carcinoma. (PMID: 27855375) Hu HB … Zheng XX (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2016) 2 3 54
  2. A gene encoding a putative GTPase regulator is mutated in familial amyotrophic lateral sclerosis 2. (PMID: 11586298) Hadano S … Ikeda JE (Nature genetics 2001) 3 54

Products for CFLAR-AS1 Gene

Sources for CFLAR-AS1 Gene